PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 791aa MW: 88791 Da PI: 4.6754 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.9 | 3.1e-10 | 640 | 681 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++av+q G++ ++ I + ++ +Rt++q+k+++ k PK09435.1 640 RWSKNDTELFYEAVRQIGTD-FTIIQQLFP-NRTREQVKLKFKK 681 9*******************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 8.4E-29 | 631 | 714 | No hit | No description |
PROSITE profile | PS51293 | 9.449 | 636 | 684 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-8 | 637 | 685 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 639 | 681 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.11E-10 | 639 | 687 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-6 | 640 | 681 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
XPKPNPLGDR RPKPKPKPNL HCRRFGGPAF RFTPIEVTMQ LDVDPLDDLL SETKTNNSHK 60 FRPKMKAQPR KGGTRGVASD LPNLMDRPVL CSIEEDPLQS AVQDSLQSVE SLGVTGKSHD 120 TNPLHSEDVV PDGNRDWQSN LGRSLGENAD IFSGLECLDD FILKLQAIPG SEASKSQSKV 180 HTDKQQSDKF LTSYGVNSNM EGPISTSHME TGSEENLSVP AHSSYDSSSF TICDVAPSQI 240 SSDYHSTQDP LSLSNTAVSD EQEEAQINDG RSKTMGAEDL FDFEMYEGTV VSGQRVGKFQ 300 PKPKLGKGKK KPSTSEPQAE VRSGVPLPAV HTVPLDQGYG QESSMLEFPS EGILDYSSVR 360 FDDSISLDPI SDIQGDTEPT NLAKATHSEV VEDDPVVEEV DGKSKIGESS TEPNDLRRSK 420 RSSASMQDIE GRKSSKQQQE DLGQLSDDPV GEVHDISGSV CDPPSTSNRD EGDNDEEFRV 480 ENTSKKKKAT RKVKEPVSGK EKPVRKRKSS KQASEEKTEE PPKKFSHSTR RKKRIVDQAL 540 LDMPEDEIDP QRLPIKDLIL LAEHRERMAI KDAAKLKTEQ TNQSTEDNFR EDVSHNEEMF 600 HSEQGEQGQN SDDNQPTYRA QPSSTYVNYH SFMDRTPSTR WSKNDTELFY EAVRQIGTDF 660 TIIQQLFPNR TREQVKLKFK KEERQHPLRL SDALTNRTKD HSHFESVIKQ LQELTAQAKQ 720 DANANESNWY PGDEEVEEPT HNANEEHAKS ELDEVVKDQE REPEVTDVQN SPLKYDEGDD 780 DPDMWNNYDD Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5n9g_C | 2e-12 | 612 | 727 | 56 | 169 | Transcription factor TFIIIB component B'' homolog |
5n9g_H | 2e-12 | 612 | 727 | 56 | 169 | Transcription factor TFIIIB component B'' homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 485 | 507 | KKKATRKVKEPVSGKEKPVRKRK |
2 | 501 | 507 | KPVRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027250.1 | 0.0 | uncharacterized protein LOC21392104 | ||||
TrEMBL | A0A2P5DVP6 | 0.0 | A0A2P5DVP6_TREOI; TFIIIB transcription factor | ||||
STRING | XP_010105352.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 5e-46 | MYB_related family protein |