PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK09224.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 350aa MW: 40147.7 Da PI: 7.2032

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09224.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.3	7.1e-25	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ HnHel PK09224.2 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 162 69******************8888.**************************************998766789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-22	71	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MTMKPSSNIW IRRQECPCED WKCCIKFEGD DQALLSSHHV KTEMITSSSP VEAVFTPYVG 60 QIFRSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRERKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIHEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKAV QESDALLTEK 240 RENDMLELVE ACKAMSVRDG DFIYEYTTDE HGRVENIAWS CGKSVRSFTV FGDVIYLDTS 300 YRSLTHGLLL GLWFGIDNHG KAIVLGCVLL QDESSHSLSW ALQVCGCKSL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MTMKPSSNIW IRRQECPCED WKCCIKFEGD DQALLSSHHV KTEMITSSSP VEAVFTPYVG  60
QIFRSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRERKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIHEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKAV QESDALLTEK  240
RENDMLELVE ACKAMSVRDG DFIYEYTTDE HGRVENIAWS CGKSVRSFTV FGDVIYLDTS  300
YRSLTHGLLL GLWFGIDNHG KAIVLGCVLL QDESSHSLSW ALQVCGCKSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015872573.1	0.0	putative protein FAR1-RELATED SEQUENCE 10, partial
Refseq	XP_024026331.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024026332.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A061EKM9	0.0	A0A061EKM9_THECC; FAR1-related sequence 10 isoform 1
STRING	EOY05178	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]