PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09224.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 692aa    MW: 80191.5 Da    PI: 6.7603
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09224.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82.1e-2471162190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w+v+++++ HnHel 
  PK09224.1  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 162
                69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2271162IPR004330FAR1 DNA binding domain
PfamPF105517.5E-21294386IPR018289MULE transposase domain
PROSITE profilePS509669.52563601IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-7573600IPR007527Zinc finger, SWIM-type
SMARTSM005757.6E-6576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTMKPSSNIW IRRQECPCED WKCCIKFEGD DQALLSSHHV KTEMITSSSP VEAVFTPYVG  60
QIFRSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRERKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIHEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKAV QESDALLTEK  240
RENDMLELVE ACKAMSVRDG DFIYEYTTDE HGRVENIAWS CGKSVRSFTV FGDVIYLDTS  300
YRSLTHGLLL GLWFGIDNHG KAIVLGCVLL QDESSHSLSW ALQSFVQFMR GRHPQTILTD  360
IDSGLRDAVA RELPNTKHVI CIWHVLSRIS SWLSLPLGSQ YAEFKSDFDM LCHLENIEEF  420
EHQWNLLIAR YGLALDKHIA LLYSYRASWS FSYIRSYFLA CMMTTEFSQC LESCMKRILS  480
VQTCLQVFFE QVSIVAESAN QLRDRMQYVH TKTCMPIEEH ARSILTPFAF HLLQHEIASS  540
MQYATTEMTN GSYIVRHYKK MDGECLVIWN PENVQIHCSC KEFEHSGILC RHSLRVLTVK  600
NFFQLPDKYI MLRWRIESSL NFMNDHNFPS TSDDCAQAFH SLTATILTES LAAKERFDYV  660
HRELRVLLEH VQNMPMADEY SSHMTANNVS ES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026331.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024026332.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2N9IHM60.0A0A2N9IHM6_FAGSY; Uncharacterized protein
STRINGEMJ181990.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]