PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25806.7 Da PI: 9.8003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.4e-12 | 46 | 93 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq PK09122.1 46 KDHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYMKQLQ 93 56999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.069 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-17 | 47 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 47 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 47 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-11 | 48 | 97 | No hit | No description |
SMART | SM00353 | 3.1E-14 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
XDGLKNNNTT SNFLPSDCVV KVANHQGANC NKRLINSTST KLSQTKDHIL AERKRREKLS 60 QRFIALSAIV PGLKKMDKAS VLGDAIKYMK QLQERVKILE EEMRKRNMES VVFVRKFQLI 120 ADKDSNSPSY SSDENYSSFD EPLPEIEARV CDKNVLIRIH CEKKKGVMEK TIVEIEKHHL 180 TIINTSCMTF GTSSLDLTII AQMNMEFSLT MKDLVKNLRL AFSLFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 8e-15 | 47 | 96 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | ERKRRE |
2 | 52 | 57 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107640.2 | 1e-106 | transcription factor bHLH18 | ||||
Swissprot | Q9T072 | 2e-61 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2P5ECZ5 | 1e-108 | A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010107640.1 | 1e-106 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-59 | bHLH family protein |