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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK09009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25618.8 Da PI: 6.5277 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 4.7e-07 | 36 | 85 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ ++erE+ R+++N+ f+eL + + ++ + Ka+iL +A++ +k+L PK09009.1 36 KRVHKSEREKMKREQLNELFFELSNAIELS----QPNNGKASILCEATRLLKDL 85 7999************************98....57799999******999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-11 | 33 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.83E-5 | 33 | 90 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-8 | 34 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.56 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-5 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGSENAVPLV DQVNVIVEAS SDRDYLGKKN RRKVPKRVHK SEREKMKREQ LNELFFELSN 60 AIELSQPNNG KASILCEATR LLKDLLAQIE DLRKENASLL SESHYVTVEK NELIEENSAL 120 ESQIGRLQGE LDSRVVQLKP DLNVSPSDSL ARPPTEHLGQ SHTVIVVPLI PDSTQIPSNP 180 TSNVSKPHAR YPTSADSWPS QLLREQQPKI GEELVKDRTR EHRENKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024018561.1 | 1e-104 | transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 4e-53 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A2P5F799 | 1e-119 | A0A2P5F799_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
STRING | XP_010092057.1 | 2e-98 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-55 | bHLH family protein |