PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08961.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 464aa    MW: 52882.6 Da    PI: 10.0776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08961.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.5e-18161245183
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 
                f+  + ps v++s  +v+p +fa++h ++  ++ +++l+ ++ r W v++ yrk+ g+  + ++ GWk F+++n+Lk+gD++vF 
  PK08961.1 161 FVVLMQPSFVGASYSMVVPFSFAKNHLLSVSKHEDVILKVQDERIWPVRYYYRKYAGHsqFRFEWGWKAFARDNDLKVGDVCVFV 245
                55667788899999************666667779***************9999988888************************8 PP
2B360.33.3e-193684491286
                HT..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3  12 ks..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                ++    +++p  fa+++  +++ ++++++l+  +gr+W vk+++     kks+++ +++GWk Fv++n+Lk+gD++ F l++
  PK08961.1 368 SKskYSMIIPSFFAKKYlLSISSGPQDVILKVHDGRTWPVKYTFyfrpHKKSSTFRIERGWKAFVQDNDLKVGDVCAFVLSK 449
                4433569***********55557889****************999998888889************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-22154254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-21156250IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-21159244No hitNo description
SMARTSM010196.3E-10160263IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056161261IPR003340B3 DNA binding domain
PfamPF023624.4E-15161245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21348462IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-21352453IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-22355461No hitNo description
SMARTSM010191.7E-11357464IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028359464IPR003340B3 DNA binding domain
PfamPF023625.1E-17370449IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASSSSHTHI AEGHTEIPPT AHHFFNTILE QTPGNTKLQI PKAFWVKYCD SLSSQVKLPC  60
GSRGEIGLTK SSDGKKHNVD VDSSNENSEL SWFSKTRDKP PLPCSWPHKK RKTSLYGKSE  120
ESSVPRRIKP QKIIRKQILR GQDKAEALMR AKGFKSNDPF FVVLMQPSFV GASYSMVVPF  180
SFAKNHLLSV SKHEDVILKV QDERIWPVRY YYRKYAGHSQ FRFEWGWKAF ARDNDLKVGD  240
VCVFVKRQNI GIILFEVVTF YKNGVPKSPV LPAANNTIPC VKVEPSFTSN NYDNASTISH  300
DIIPKKEVIE PSVNKSDKVC GESPLPENFI RNQELSRKEK DEALKIAKDF KSEDPFFIVP  360
MQPSFVGSKS KYSMIIPSFF AKKYLLSISS GPQDVILKVH DGRTWPVKYT FYFRPHKKSS  420
TFRIERGWKA FVQDNDLKVG DVCAFVLSKN IGIILFEVII FHNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-1413524423125B3 domain-containing transcription factor VRN1
4i1k_B6e-1413524423125B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.17e-14B3 family protein