PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ERF | ||||||||
Protein Properties | Length: 100aa MW: 11115.3 Da PI: 11.0645 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25 | 4.7e-08 | 73 | 92 | 2 | 22 |
AP2 2 gykGVrwdkkrgrWvAeIrdp 22 +y+GVr+++ +g+++AeIrd PK08949.1 73 HYRGVRRRP-WGKYAAEIRDS 92 8********.**********3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-9 | 72 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.192 | 73 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-6 | 73 | 99 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MMLELPFNEN DSQDMVIYQV LNEASMSLST TSVMPRRHPT TATATPSTTP TGAGGGNGNH 60 HSLPVRNITM KKHYRGVRRR PWGKYAAEIR DSTRQGARVX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023908481.1 | 6e-29 | pathogenesis-related genes transcriptional activator PTI5-like | ||||
TrEMBL | A0A2P5DXA7 | 3e-38 | A0A2P5DXA7_PARAD; AP2/ERF transcription factor | ||||
STRING | POPTR_0011s06010.1 | 2e-26 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9339 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-17 | ethylene response factor 1 |