PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08776.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 562aa    MW: 61087.4 Da    PI: 6.8324
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08776.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.5e-31216273260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  er++ d++++ei+Y+g+H+h+k
  PK08776.1 216 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAH-DGQITEIVYKGTHDHPK 273
                7***************************************9.***************85 PP
2WRKY106.31.6e-33387445159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  PK08776.1 387 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 445
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.09E-24214274IPR003657WRKY domain
SMARTSM007741.6E-33215273IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-26215274IPR003657WRKY domain
PfamPF031061.9E-24216272IPR003657WRKY domain
PROSITE profilePS5081122.492216274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37372447IPR003657WRKY domain
SuperFamilySSF1182901.96E-29379447IPR003657WRKY domain
PROSITE profilePS5081138.825382447IPR003657WRKY domain
SMARTSM007743.1E-39387446IPR003657WRKY domain
PfamPF031063.3E-26388445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEAAAADLHR RSSDDVDLGR NEFPDPPSGC GGAKYKLLSP AKLPISRSAC LTIPPGLSPS  60
SFLESPVLLS NMKAEPSPTT GTFMKPQMAQ GSVGSAAYST TTVYSNINVS DNKSSSTFEF  120
KPHALSNMVT AEINTQRNAV SLQVQSQPQS FGTVSLVKSE VAVNSNELGF SSAARGVVAS  180
ADGDSDELNQ RGNSSSGVQT AQFDHKGNGP SVISSEDGYN WRKYGQKHVK GSEFPRSYYK  240
CTHPNCEVKK LFERAHDGQI TEIVYKGTHD HPKPQPSRRY NTGSIMSNQE ERSDKFSSII  300
GRDDKSSIYG QGSNTNEPNG TPDQSPIATI DDIVEATGNR ISDDADDDDP FSKRRKMEIG  360
CIDVTPVVKP IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV  420
RKHVERASHD PKAVITTYEG KHNHDVPAAR NSSHELVGSM AASIPARIRP EETDTISLDL  480
GVGISSATDN RSNEQHPTAQ SEQMESRSHN SNVNVAQGGT TFYGILGNGL NQFGSRENIE  540
ISTLNHSSYP YPQNMGRILT GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37195448578Probable WRKY transcription factor 4
2lex_A1e-37195448578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9333881e-83KJ933388.1 Rosa hybrid cultivar Radrazz SUSI1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902625.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2P5F8K30.0A0A2P5F8K3_TREOI; WRKY domain containing protein
STRINGXP_010097277.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein