PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK08747.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 222aa MW: 24365.9 Da PI: 6.0946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK08747.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	172	208	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+r+++ Lr ++P + ++ +++L +Av+Y+ksL PK08747.1 172 RHRMKKMVKALRGIVPGgN------DMTTVTVLDEAVQYLKSL 208 6899999999****955......69************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.02	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-5	166	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-7	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-8	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.52E-7	169	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MHVPVASGFG AAALPPGGNH LKHFHGVEFQ PSEVCPKNFI IFDQTDHRSQ IMFHPAIANK 60 FGSPALNMGS ACVQGYFGGI DRNNNEVGEL SSTLKEDSDD IDALLSLEEE EEEEEYDEEE 120 LSTARTYGNY GSSSPESCSN YGTRNKKNRT SSSSVQKSSD SGSSSSNSER KRHRMKKMVK 180 ALRGIVPGGN DMTTVTVLDE AVQYLKSLKV EVQKHGVKNF RN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022172.1	1e-103	transcription factor bHLH144
Refseq	XP_024022173.1	1e-103	transcription factor bHLH144
Refseq	XP_024022174.1	1e-103	transcription factor bHLH144
Swissprot	Q9ASX9	1e-45	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A126G8M8	1e-111	A0A126G8M8_MORAL; Basic helix-loop-helix 144-like protein transcript variant 1
STRING	XP_010097603.1	5e-98	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11411	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-33	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]