PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08602.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 262aa    MW: 29970.7 Da    PI: 7.012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08602.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-193079255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  PK08602.1 30 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 79
               69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.35E-322989No hitNo description
SMARTSM003803.3E-373093IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-213088IPR016177DNA-binding domain
PROSITE profilePS5103222.8933087IPR001471AP2/ERF domain
PfamPF008473.5E-133079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-313088IPR001471AP2/ERF domain
PRINTSPR003671.3E-103142IPR001471AP2/ERF domain
PRINTSPR003671.3E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
XMENYKKSPL KPWKKGPTRG KGGPLNASCE YRGVRQRTWG KWVAEIREPK KRTRLWLGSF  60
STAEEAAMAY DEAARRLYGP DAYLNLPHLY HHQQQQQQNS IKSHNFKWLP SKNFMSMFPS  120
CGLLNINAQP SVHVIHQRLQ ELKQKSSLTQ ISTSSSSSSD TKSETHQINT EEKTQQGNLT  180
EKEKNHDGGD NEKPQIDLHE FLQQIGVMKG GRDSKLEEEE ADDDDDMGKH MATQDQTSSS  240
VEEIHDHGHE LGAFTDKNFN WX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-183187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091861.11e-114dehydration-responsive element-binding protein 2F
SwissprotQ9SVX56e-83DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2P5A6771e-125A0A2P5A677_PARAD; AP2/ERF transcription factor
STRINGXP_010091861.11e-114(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-71ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]