PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK08284.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HD-ZIP
Protein Properties Length: 823aa    MW: 89734.1 Da    PI: 6.0278
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK08284.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182583357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PK08284.1 25 KYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
               5679*****************************************************97 PP
2START155.15.7e-491663732204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d+  W +++++ e+      g  g+++l +++++
  PK08284.1 166 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQGCSGVAARACGLVSLEPT-KIAEILKDRTSWFRDCRSLEVFTMFPAGngGTIELVYTQTY 264
                7899******************************************************.7777777777***********999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rdf+++Ry+  l+ g++v++++S++     p     +++vR+e+lpSg+li+p+++g+s +++v+h  l++++++++lr+l++s+ + ++k 
  PK08284.1 265 APTTLAPaRDFWTLRYTTNLENGSLVVCERSLSGSGAGPDsasAAQFVRGEMLPSGYLIRPCEGGGSIIHIVDHLKLEAWSVPEVLRPLYESSKVVAQKV 364
                *********************************9888888788999****************************************************** PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  PK08284.1 365 TIAALRYIR 373
                ***999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4832084IPR001356Homeobox domain
SMARTSM003892.5E-152288IPR001356Homeobox domain
SuperFamilySSF466891.5E-162387IPR009057Homeodomain-like
CDDcd000862.03E-162585No hitNo description
PfamPF000465.2E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-182783IPR009057Homeodomain-like
CDDcd146862.29E-677116No hitNo description
PROSITE profilePS5084827.225156384IPR002913START domain
CDDcd088751.29E-70160376No hitNo description
SMARTSM002344.6E-39165375IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-19165348IPR023393START-like domain
SuperFamilySSF559614.4E-33165377No hitNo description
PfamPF018529.1E-47166373IPR002913START domain
PfamPF086703.3E-38701823IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MAMAVVQHRE SSSGSSINKH LDNGKYVRYT TEQVEALERV YAECPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TVSASAATTD ASCDSVVTTP QHSLRDANNP AGLLSIAEET LAEFLSKATG  180
TAVDWVQMPG MKPGPDSVGI FAISQGCSGV AARACGLVSL EPTKIAEILK DRTSWFRDCR  240
SLEVFTMFPA GNGGTIELVY TQTYAPTTLA PARDFWTLRY TTNLENGSLV VCERSLSGSG  300
AGPDSASAAQ FVRGEMLPSG YLIRPCEGGG SIIHIVDHLK LEAWSVPEVL RPLYESSKVV  360
AQKVTIAALR YIRQIAQETS GEVVYSLGRQ PAVLRTFSQR LIRGFNDAVN GFNDDGWSIV  420
TVDSSEDVTI AINSGKNLST IANPSNSLAF LGGVLCAKAS MLLQNVPPAV LVRFLREHRS  480
EWADFNVDGY TASALKAGSY AYPGMRPTRF TGSQIIMPLG HTIEHEELLE VVRLEGHSLA  540
QEDAFLSRDI HLLQICSGVD DNAVGACSEL VFAPIDEMFP DDAPLLPSGF RIIPLESKPS  600
DSKDALPAHR TLDLTSSLEV GPATSLTGGD PSSGQNARSL LTIAFQFPFE SSLQDNVATM  660
ARQYVRSVIS SVQRVAMAIS PSGSSPGIGP KLSQSSPEAL TLANWICQSY SYYMGSELVR  720
SDNLGGGDSL LKNLWHHQDA ILCCSLKSLP VFIFANQAGL DMLETTLVAL QDITLDKIFD  780
ESGRKALFTD FAKLMQEGFG CLPSGLCMST MGRHVSFDQA VAW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027910340.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2P5FTV80.0A0A2P5FTV8_TREOI; Octamer-binding transcription factor
STRINGcassava4.1_001649m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]