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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK08180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 23926 Da PI: 4.7328 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.8 | 5.2e-24 | 5 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekew.yfFskrdkkyat.gkrknratksgyWkatgkdkevlskk 96 lppG+ F P++eel+v+yL+kkv+g++l++ +i+e ++y ++Pw+L + ++ ++ + y Fs+ +k ++ +kr++r++ +g +++ +++s++ PK08180.1 5 LPPGYVFAPSEEELIVDYLEKKVNGHSLPM--HINEDNVYLYNPWQLIQkyPLQRFDEGClYLFSPLHKLSEGgNKRPSRSAGDGHYRSSRC-YPIISSE 101 79*************************999..7**************74233333344445****9999877536799**99***9997765.777777* PP NAM 97 gelvglkktLvfy....kgrapkgektdWvmheyrl 128 g+++g + L fy ++++ + +kt+W++ eyrl PK08180.1 102 GNTIGYETHLKFYmgkpSNKDDDDNKTNWLLTEYRL 137 *************554444555667*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-32 | 4 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.84 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-13 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTKNLPPGYV FAPSEEELIV DYLEKKVNGH SLPMHINEDN VYLYNPWQLI QKYPLQRFDE 60 GCLYLFSPLH KLSEGGNKRP SRSAGDGHYR SSRCYPIISS EGNTIGYETH LKFYMGKPSN 120 KDDDDNKTNW LLTEYRLMNK QPNNNNNNKT LDECVLCKLY YNGDGEENED EDEDEESRKR 180 KRFTTSTTTE DQKEEDNKNN DPLSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-30 | 4 | 160 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-30 | 4 | 160 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-30 | 4 | 160 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-30 | 4 | 160 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 4 | 160 | 19 | 166 | NAC domain-containing protein 19 |
4dul_A | 9e-30 | 4 | 160 | 16 | 163 | NAC domain-containing protein 19 |
4dul_B | 9e-30 | 4 | 160 | 16 | 163 | NAC domain-containing protein 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 5e-29 | NAC domain containing protein 3 |