PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK07906.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WOX

Protein Properties

Length: 216aa MW: 25506.2 Da PI: 9.0337

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07906.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.6	1.8e-22	68	127	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ PK07906.1 68 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 127 7***************99************************************97 PP
2	Wus_type_Homeobox	116.4	1.4e-37	67	129	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ PK07906.1 67 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 129 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.6E-5	65	132	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-20	68	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-13	68	133	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-9	68	127	IPR009057	Homeodomain-like
CDD	cd00086	4.02E-5	69	129	No hit	No description
PROSITE profile	PS50071	11.224	73	128	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048513	Biological Process	animal organ development
GO:0099402	Biological Process	plant organ development
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
XQQQQQQQQQ PTNPNNNINN NFQTTQQYHQ LVSNTNTNTS TDYHHHQNMM MMMSKKELNI 60 GQQVVVSSRW NPTPEQLRAL EELYRRGTRT PSAEQIQHIT AQLRRYGKIE GKNVFYWFQN 120 HKARERQKRR RQIMESSSSS SLSPDNDNQN HQEEMTLLEG SNNNNKTKNW VPTSTSTNTL 180 LEECNVSIER SGKATGESDQ WTHHHHDHHH HHHHHX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008364689.2	9e-53	WUSCHEL-related homeobox 1-like
Swissprot	Q6X7K0	3e-40	WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBL	A0A2P5E0Q3	3e-64	A0A2P5E0Q3_TREOI; Homeodomain transcription factor
STRING	XP_008364689.1	3e-52	(Malus domestica)
STRING	XP_008374987.1	4e-52	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2892	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-40	WUSCHEL related homeobox 1

Publications ? help Back to Top
Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086]