PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK07851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 461aa MW: 51627.4 Da PI: 10.44 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.9e-07 | 8 | 45 | 2 | 33 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......T CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......k 33 g W t+E++ll av ++G+++W+t+a+++ PK07851.1 8 GEWGTWEELLLGGAVLRHGTRDWDTVAAELRaralcsY 45 79***************************996555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 7.2E-6 | 8 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF47370 | 2.22E-17 | 259 | 369 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 6.7E-16 | 260 | 372 | IPR001487 | Bromodomain |
SMART | SM00297 | 7.9E-14 | 265 | 369 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.89E-14 | 272 | 364 | No hit | No description |
Pfam | PF00439 | 6.6E-12 | 273 | 353 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 9.918 | 280 | 350 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MVTAVMEGEW GTWEELLLGG AVLRHGTRDW DTVAAELRAR ALCSYNYTGQ VCKAKYEDLQ 60 HRYRGCTAWF EELRKKRMAE LRQALDHSED SIGSLETKLE TLKAEKGVSR VNYASSQTES 120 PSTLQKLEGV DSFSKESKDG LSAGSFTLET RTSWSAECLN PCTVSAEETE TKLKDLHSFK 180 TAEACNTEKL ADHVHERQGS ILKKRRGKRK RKDCSRDIKE SSVGESGFLD SAEAVTAFRS 240 KENTTSDCGE VSRSSGLDNQ SKGTKKDSID DLLKIFNSIV EHKCASTFRR RLDSQKRGRY 300 KKMIRKHMDF DTLRSRITSR SVMSVKELFR DLLLLANNSL VFYSKNTREH KSALLLRDLT 360 TKTLLQHFKD STSIKAASAN ISVITTIQSS PPPLPPQVKP RSNHSGNNKN SAVKPTHPKI 420 NDAAKSPKKG SSQARRVGRK SNTQQQPTVA PAKGRKRGRV R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 208 | LKKRRGKR |
2 | 202 | 207 | KKRRGK |
3 | 204 | 212 | RRGKRKRKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105623.1 | 0.0 | uncharacterized protein LOC21384416 | ||||
TrEMBL | A0A2P5G0U6 | 0.0 | A0A2P5G0U6_TREOI; Bromodomain containing protein | ||||
STRING | XP_010105623.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6304 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57980.1 | 2e-24 | DNA-binding bromodomain-containing protein |