PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07805.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family FAR1
Protein Properties Length: 804aa    MW: 92675.1 Da    PI: 7.6257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07805.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.96.3e-2766151291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk+++dgkw+++++++eHnH+l p
  PK07805.1  66 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKQDGKWYIYSFVKEHNHDLLP 151
                ****************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2466151IPR004330FAR1 DNA binding domain
PfamPF105518.3E-30265358IPR018289MULE transposase domain
PROSITE profilePS509669.619545581IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7551579IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-6556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MFMEHMKRCR LISSSVENQV LGGCKVDLNI PTMSSSMDNT NVIIPNPIVE PHDGIEFESH  60
EDAYTFYKEY AKSVGFGTAK LSSRRSRASK EFIDAKFSCI RYGNKQQSDD AINPRPSPKI  120
GCKASMHVKR KQDGKWYIYS FVKEHNHDLL PAQAHFFRSH RNAADTMKND VRIRRRKNLA  180
NVSKLFSAYQ NVECLESYLR NQHDKGRYLV LESGDAEMLL EHFMQMQVDN PKFFYAVDLN  240
EEHRLRNVFW VDAKGMEDYS NFNDVISFDT TYFSNKYKIP LAFFIGVNHH TQPTLLGCAL  300
IADESLYTFV WLMQTWFIAM GEQAPRVILT DQNNAIKTAV AAVFPSTRHY FCLWHVMEKV  360
PRQLEFLGMW HDSVMKKFSK CIFKSWSEGQ FEKRWWKLIE KFNLRQVEWI QSLYEDRMYW  420
VPTFVRDISF AGLSTTSRLE SLNSLFDKYV QRETSLRDFM ERYREILEDR YEEEAKANFD  480
AWHETPELKS PSPFEKQMSL VYTHEIFKKF QVEVLGAAAC HLKKENEDGT STTYAVKDFE  540
DSQNYIVEWN ESKSDIFCLC QSFEYKGYLC RHAIVVLQMS GVFSIPPKYV LQRWTNAAMS  600
RHPIGEKLDN VQRKVRRYND LCRRAIILGE EGSLSEQSYN AALSAIKEAL KQCANLTNSL  660
DNNTRPDTSA VVGGVCTVDA ENQCSNASTY EVSDVKVTPT HSERPEPGKE TSSKKGKLHQ  720
TTEAASVVTH QGSFHQTEFS GSNMMQQLQN VVVPTQLHNM NMMPPPPPTA MFQTVSVAQF  780
HNMAAAAAAA STTHLHHNNP RLPR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087462.10.0protein FAR1-RELATED SEQUENCE 4
RefseqXP_024021010.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLW9QKD50.0W9QKD5_9ROSA; Protein FAR1-RELATED SEQUENCE 4
STRINGXP_010087462.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]