PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07387.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 534aa MW: 59708.1 Da PI: 7.1937

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07387.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	213	254	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L PK07387.1 213 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 254 6889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-6	210	273	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	212	256	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.0E-8	213	255	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-6	214	256	No hit	No description
CDD	cd14708	2.33E-23	214	265	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.1E-8	215	257	No hit	No description
PROSITE pattern	PS00036	0	217	232	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	295	370	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MASHRVVETT TGLSDSGPYG VFHHNMNINT PSTSFINQDG SSAFDFGELE QAIALQGVKI 60 SGGNDHHHHE VNNNNNNKTT LFTTSSSNTN NNNNNNRPAA TLEMFPSWPM RYHQTPRASS 120 KSGGGGDDST DNSGSAKADQ TQLESESPLS NNNINNIINH NQKNQPSFDY DHQQQQQQQL 180 QENNSSKLQS SNSKHTQEKR KGAGSTSEKP LDAKTLRRLA QNREAARKSR LRKKAYVQQL 240 ESSRIKLTQL EQDLQRARAQ GLFLGACGGA SGNISPGAAI FDMEYGRWLE DDQRHMTELR 300 TSLQAHLPEG DLRMIIDGYI SHYDEIFRLK AVAAKSDVFH LITGMWTTPA ERCFLWMGGF 360 RPSDLIKMLI AQLDPLTDQQ LMGIYSLQQS SQQAEEALSQ GLEQLQQSLV DTIAGSPVIV 420 DGMQQMAVAL GKLSNLEGFV RQADNLRQQT LHQLRRTLTV RQAARCFVVI GEYYGRLRAL 480 SSLWASRPRD TNNNINQSMV VNDDTTSCQT TTDLQMVHHQ HPHDPHHHHH FSSF

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MASHRVVETT TGLSDSGPYG VFHHNMNINT PSTSFINQDG SSAFDFGELE QAIALQGVKI  60
SGGNDHHHHE VNNNNNNKTT LFTTSSSNTN NNNNNNRPAA TLEMFPSWPM RYHQTPRASS  120
KSGGGGDDST DNSGSAKADQ TQLESESPLS NNNINNIINH NQKNQPSFDY DHQQQQQQQL  180
QENNSSKLQS SNSKHTQEKR KGAGSTSEKP LDAKTLRRLA QNREAARKSR LRKKAYVQQL  240
ESSRIKLTQL EQDLQRARAQ GLFLGACGGA SGNISPGAAI FDMEYGRWLE DDQRHMTELR  300
TSLQAHLPEG DLRMIIDGYI SHYDEIFRLK AVAAKSDVFH LITGMWTTPA ERCFLWMGGF  360
RPSDLIKMLI AQLDPLTDQQ LMGIYSLQQS SQQAEEALSQ GLEQLQQSLV DTIAGSPVIV  420
DGMQQMAVAL GKLSNLEGFV RQADNLRQQT LHQLRRTLTV RQAARCFVVI GEYYGRLRAL  480
SSLWASRPRD TNNNINQSMV VNDDTTSCQT TTDLQMVHHQ HPHDPHHHHH FSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017016.1	0.0	LOW QUALITY PROTEIN: transcription factor TGA9
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2P5AXW5	0.0	A0A2P5AXW5_PARAD; Basic-leucine zipper transcription factor
STRING	XP_006487948.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]