![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK07332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 684aa MW: 76305 Da PI: 6.2785 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+lt sd++++g +++ +k+a+e+ + +++ +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++el+v+ PK07332.1 126 FCKILTASDTSTHGGFSVLRKHATEClpsldMTQTTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGELRVG 223 99****************************9555566679************************************************..3489999*** PP EE- CS B3 96 vfr 98 v+r PK07332.1 224 VRR 226 *98 PP | |||||||
2 | Auxin_resp | 103.7 | 2.2e-34 | 252 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++k++vGmRfkm+fe+eds+err++Gt+vgv dl++ +W nSkWrsLk PK07332.1 252 ASHAFNTRTLFVVYYKPRT--SQFIIGLNKYLDAMNNKLTVGMRFKMRFEGEDSPERRFTGTIVGVGDLSS-QWANSKWRSLK 331 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.37E-41 | 115 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-39 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.12E-19 | 124 | 226 | No hit | No description |
SMART | SM01019 | 3.8E-21 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.984 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-21 | 126 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-32 | 252 | 331 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 7.9E-7 | 555 | 606 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.22E-10 | 567 | 646 | No hit | No description |
PROSITE profile | PS51745 | 23.782 | 570 | 662 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 684 aa Download sequence Send to blast |
MAHLEGGSSI SRSETGPEDS IFKELWNACA GPLVEVPRPG ERVFYFPQGH MEQLEASTNQ 60 EVNQQLPLFN LPSKILCSVL NIEYLAEQET DEVYARITLV PETNQTEPTS PDPCVDEPAR 120 PNVHSFCKIL TASDTSTHGG FSVLRKHATE CLPSLDMTQT TPTQELAAKD LHGYEWKFKH 180 IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRGDNGEL RVGVRRLACQ QSLMPSSVIS 240 SHSMHLGVLA TASHAFNTRT LFVVYYKPRT SQFIIGLNKY LDAMNNKLTV GMRFKMRFEG 300 EDSPERRFTG TIVGVGDLSS QWANSKWRSL KIQWDEHASI PRPERVSPWE IEPFVASSAP 360 LNLTQPVTKN KRPRPVDIPQ SEITLNSAAS AFWYQGSTTQ SELTQLGSSA DVQSSDSQAV 420 WPLKNKDISN GNYYGSMFRS EGIWPSPHVG ISLNLFSEST GDAKTVSARS LLSGCDSSIS 480 SRVNDQYENV AKLDASVGCR LFGINLTCNS PPFPSHLERE SPSLVMPAAV SEVDKFHNQV 540 ITNLTKDQKV MSESPQKDTQ CKHSFLSSRS RTKKVQMQGV AVGRAIDLTT LNGYDDLIDE 600 LEKMFEINGE LRPPSKWAVV FTDDENDMML VGDDLWTDFC KMVKKIFIYS SEEVKKMSNF 660 KLRGSSVECE GNTISLDSEH RAEA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-176 | 19 | 354 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-176 | 19 | 354 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-176 | 19 | 354 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 370 | 374 | KRPRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888765.1 | 0.0 | auxin response factor 18 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A2P5FHL9 | 0.0 | A0A2P5FHL9_TREOI; Auxin response factor | ||||
STRING | XP_010100721.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |