PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07315.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 247aa    MW: 27414.9 Da    PI: 10.7356
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07315.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-20166199134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++t+Tp+WR+gp+g+ktLCnaCG++yr+ +
  PK07315.2 166 CTHCQVTSTPQWREGPSGPKTLCNACGVRYRSGR 199
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.5E-17160210IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.532160196IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-15163223No hitNo description
Gene3DG3DSA:3.30.50.103.2E-15164197IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.71E-15165222No hitNo description
PfamPF003208.3E-18166199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
KPNKILPTSY EKSCRLKQLP TASSAAETEN TIKSSNAGSK LLSHDSTDVK SVRLFNSSSP  60
VSTLESTNAY FTENQRHVDK KFIAPKRRAR SKRQRFSNLD RLRSLSFFPP TCSSFASVYP  120
ESDSGTVDDG KMFKPCVKKP VRKGGGETRN NKLKEPNTTT TTTKRCTHCQ VTSTPQWREG  180
PSGPKTLCNA CGVRYRSGRL FPEYRPAASP TFIPSVHSNS HKKVIEMRNK GGGGTSVEHN  240
SVRHVFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490PKRRARS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017101.12e-63GATA transcription factor 11-like
TrEMBLA0A2P5DU174e-67A0A2P5DU17_PARAD; GATA transcription factor
STRINGXP_010089971.15e-59(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-41GATA transcription factor 11