PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK07194.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 695aa MW: 77052.4 Da PI: 6.233

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK07194.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.9e-07	103	127	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG C+y d+C+F+H+ PK07194.1 103 ICPEVAKTGdpsSCPYSDKCRFSHD 127 7***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.8E-4	96	129	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.638	98	129	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0074	99	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-5	103	127	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	28	139	166	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.301	142	167	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	1.6E-68	339	582	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	1.03E-59	343	656	No hit	No description
CDD	cd02801	1.23E-83	343	578	No hit	No description
Pfam	PF01207	7.0E-47	346	592	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	427	445	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MDESPADVQL VHEPKDSATP VVEASNGQPE YRTPEELVAK AIAPVKREFL RPPPVRPVSN 60 SNEDGAASES KEKPAQPSVG KEKKSKRQAK RDRLQQQKST SNICPEVAKT GDPSSCPYSD 120 KCRFSHDVEA FKDQKLEDLE GECPFVTAEE PCPYGLACRF LSTHPEGVSG MKSTRRNSSE 180 VNGLRKDVQR LLWKNKMKFP KADAKVKALG LMGPANSKAK ISENKDGDDV ITANNCDAAN 240 GNGSNALVDA TEIEKSAVLE ENKDVEDPSE SNESRPLKKP KCVDAEDCCD KVEGGGVSGT 300 ENVVCESSKQ PEADSAAEIL TPETDGSLKV HPREKKIIDF RDKLYLAPLT TVGNLPFRRV 360 CKVLGADVTC GEMAMCTNLL QGQASEWALL RRHVSEDLFG VQICGAFADT VSRAVELIEQ 420 ECSLDFIDIN MGCPIDLVCN KGAGSALLMK PMRMKGIIEA ASGTMEKPLT VKVRTAYFEG 480 KNRIDSLIAD MGNWGASAVT IHGRSRQQRY SKLADWEYVY QCANKAPDTL HVLGNGDIFS 540 YLDWNKRKVD CPKLSTCMIA RGALVKPWLF TEIKEQRHWD ISSGERLDIL KKFVRFGLEH 600 WGSDTKGVET TRRFLLEWLS YTCRYVPVGL LEVIPQRLNW RQPSYFGRND LETLMASDSA 660 ADWIRISEML LGKVPEDFTF APKHKSNAYD RAENG

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MDESPADVQL VHEPKDSATP VVEASNGQPE YRTPEELVAK AIAPVKREFL RPPPVRPVSN  60
SNEDGAASES KEKPAQPSVG KEKKSKRQAK RDRLQQQKST SNICPEVAKT GDPSSCPYSD  120
KCRFSHDVEA FKDQKLEDLE GECPFVTAEE PCPYGLACRF LSTHPEGVSG MKSTRRNSSE  180
VNGLRKDVQR LLWKNKMKFP KADAKVKALG LMGPANSKAK ISENKDGDDV ITANNCDAAN  240
GNGSNALVDA TEIEKSAVLE ENKDVEDPSE SNESRPLKKP KCVDAEDCCD KVEGGGVSGT  300
ENVVCESSKQ PEADSAAEIL TPETDGSLKV HPREKKIIDF RDKLYLAPLT TVGNLPFRRV  360
CKVLGADVTC GEMAMCTNLL QGQASEWALL RRHVSEDLFG VQICGAFADT VSRAVELIEQ  420
ECSLDFIDIN MGCPIDLVCN KGAGSALLMK PMRMKGIIEA ASGTMEKPLT VKVRTAYFEG  480
KNRIDSLIAD MGNWGASAVT IHGRSRQQRY SKLADWEYVY QCANKAPDTL HVLGNGDIFS  540
YLDWNKRKVD CPKLSTCMIA RGALVKPWLF TEIKEQRHWD ISSGERLDIL KKFVRFGLEH  600
WGSDTKGVET TRRFLLEWLS YTCRYVPVGL LEVIPQRLNW RQPSYFGRND LETLMASDSA  660
ADWIRISEML LGKVPEDFTF APKHKSNAYD RAENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	8e-25	340	587	27	266	tRNA-dihydrouridine synthase B
6ei9_B	8e-25	340	587	27	266	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010095677.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2P5FQ79	0.0	A0A2P5FQ79_TREOI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_010095677.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10889	12	12

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]