PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK06964.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

YABBY

Protein Properties

Length: 192aa MW: 21391.2 Da PI: 10.0523

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK06964.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234	3.5e-72	2	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105 +se+vCyvqCn CntilavsvP +slf++vtvrCGhC++llsvn+ +++ ++a ++h + + ++++ + +++++ s +k++++++ + + ++ PK06964.1 2 ASERVCYVQCNLCNTILAVSVPCSSLFTIVTVRCGHCANLLSVNMGTSMPTMAPQDHPQSQNNKQIIVSSEGSGKEYGSSSSKSNKNKHATVE---PVKH 98 69*****************************************************999999998888887888887777666655444433...4555 PP YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 d+ + +pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl PK06964.1 99 DQPIR-TPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 55554.556.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.3E-74	2	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-8	103	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MASERVCYVQ CNLCNTILAV SVPCSSLFTI VTVRCGHCAN LLSVNMGTSM PTMAPQDHPQ 60 SQNNKQIIVS SEGSGKEYGS SSSKSNKNKH ATVEPVKHDQ PIRTPPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLDGTNNKQ AKLDKTIARD 180 HHQGTQKTNG FY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090516.1	2e-96	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	1e-73	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	W9QKW0	5e-95	W9QKW0_9ROSA; Uncharacterized protein
STRING	XP_010090516.1	9e-96	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-72	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]