PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06890.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 330aa    MW: 35569.5 Da    PI: 6.6252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06890.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.6e-3154112259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  PK06890.1  54 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 112
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.92548114IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-3150114IPR003657WRKY domain
SuperFamilySSF1182901.83E-2651114IPR003657WRKY domain
SMARTSM007741.4E-3753113IPR003657WRKY domain
PfamPF031066.0E-2655112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
XLLDNSTTAT TGGLQISSPR NPGIKRRKSQ AKKVVCIPAP AAANSRATGE VVPSDLWAWR  60
KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN HPWPTQRNAL  120
AGSTRSQPSK NTPNSIKTTS SSNPLLMSSS HHQLQKSGTT SPKEDSTMMM IHSQNDNSIS  180
CGAGGGSTSS TTSASVKVEE NVDHDENIDE KNNDHDQVDD SSCDHDHDNG VEAVGGLFPY  240
RPTMPGPNLT SSAVDQDFFA DLGEIEADPL NLLFSQSFNS ADHHDHTHKG MLISKGLDPF  300
NLFDWSAGST GGGGDDHNNI GADNNNNNNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-2628115280Disease resistance protein RRS1
5w3x_D5e-2628115280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900686.11e-113probable WRKY transcription factor 14
SwissprotO647472e-74WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A2P5CRQ81e-140A0A2P5CRQ8_PARAD; WRKY domain containing protein
STRINGXP_010098516.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-72WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]