PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK06301.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 250aa    MW: 27444.5 Da    PI: 6.5142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK06301.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13186231655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  PK06301.1 186 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKCLQ 231
                689*********************7....688****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-10184235No hitNo description
Gene3DG3DSA:4.10.280.109.7E-16185243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-12186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10186231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XGGGGGVSRG GLTRFRSTPA NWLEALLEDE EEDQLLKPTQ CLTQLLTEHS SPATATGSVP  60
FGHSEHPCSF ADEASGFLRQ NSSPADFLGT SGHASDGFFS NFEIPASFDL SSSANLNVAS  120
PTGSGKKSRE VETVRTFSEN TLSSPIKMEQ GGRVSGLLDT EMEKLLEDSV PLRVRAKRGC  180
ATHPRSIAER VRRTRISDRI RKLQELVPNM DKQTNTADML EEAVEYVKCL QKKIQELSEH  240
QLRCKCKNKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021064.18e-99transcription factor bHLH81
RefseqXP_024021065.18e-99transcription factor bHLH81
RefseqXP_024021066.18e-99transcription factor bHLH81
SwissprotQ9C8P84e-83BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2P5FQT71e-104A0A2P5FQT7_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010095898.11e-89(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-71bHLH family protein