PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06287.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 21111.2 Da PI: 10.1581 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.5 | 1.3e-53 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrFhPtdeel+ +yL+k++++++l++ ++i+evdiyk++Pw+Lp k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s+ PK06287.2 8 LPPGFRFHPTDEELILHYLRKRINSTPLPV-SIIAEVDIYKFDPWQLPDKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIISSslcss 106 79****************************.89***************8777899***************************************989888 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kk Lvfykgr pkg+kt+W+mheyrl PK06287.2 107 ssYHQNIGVKKALVFYKGRPPKGVKTNWIMHEYRL 141 776677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-61 | 5 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.642 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-28 | 9 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MKNPQSNLPP GFRFHPTDEE LILHYLRKRI NSTPLPVSII AEVDIYKFDP WQLPDKALFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIIS SSLCSSSSYH QNIGVKKALV 120 FYKGRPPKGV KTNWIMHEYR LAESPTYAYN SKLNNINKVK DSSMRVSDTC QLKIGFLLVY 180 VNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-66 | 5 | 155 | 14 | 156 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-66 | 5 | 155 | 14 | 156 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-66 | 5 | 155 | 14 | 156 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-66 | 5 | 155 | 14 | 156 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swm_B | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swm_C | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swm_D | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swp_A | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swp_B | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swp_C | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
3swp_D | 5e-66 | 5 | 155 | 17 | 159 | NAC domain-containing protein 19 |
4dul_A | 5e-66 | 5 | 155 | 14 | 156 | NAC domain-containing protein 19 |
4dul_B | 5e-66 | 5 | 155 | 14 | 156 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088481.1 | 9e-96 | NAC transcription factor 47 | ||||
Swissprot | Q84TD6 | 3e-81 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A2P5AK11 | 7e-99 | A0A2P5AK11_PARAD; NAC domain containing protein | ||||
STRING | XP_010088481.1 | 3e-95 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 2e-82 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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