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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK06103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28113.4 Da PI: 10.5228 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ PK06103.1 5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDPEfssilHLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.139 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.8E-15 | 2 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.29E-17 | 6 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 5.2E-16 | 116 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.6E-12 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 3.1E-17 | 117 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 23.605 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.6E-11 | 124 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI LHLRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLPTPK LDNNPLALVT VVQNVEEVVD AKPLAIASGT MRNTNSKEPN 120 ARLDKLILDA ITNLRELRGS DRAAIAMYIE EKYWAPPNLK KLLSTKLKHM TENGKLIKVK 180 HRYRIGSSST GAEKRRNSSV LPLEERPKDH SVAEKSDVII LTKSQVDADL SKMRSMTAQE 240 AAAAAAQAVA EAEAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | 25215497 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205635.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_008237807.1 | 1e-129 | PREDICTED: telomere repeat-binding factor 2 | ||||
Refseq | XP_008237815.1 | 1e-129 | PREDICTED: telomere repeat-binding factor 2 | ||||
Refseq | XP_008237823.1 | 1e-129 | PREDICTED: telomere repeat-binding factor 2 | ||||
Refseq | XP_008237830.1 | 1e-129 | PREDICTED: telomere repeat-binding factor 2 | ||||
Refseq | XP_020421050.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_020421051.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_020421052.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805529.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805530.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805531.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021805532.1 | 1e-129 | telomere repeat-binding factor 2 | ||||
Swissprot | Q9FJW5 | 4e-77 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A2P5D0H9 | 1e-133 | A0A2P5D0H9_PARAD; Telomeric repeat-binding factor | ||||
STRING | XP_008237807.1 | 1e-128 | (Prunus mume) | ||||
STRING | EMJ06834 | 1e-128 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 2e-76 | MYB_related family protein |
Publications ? help Back to Top | |||
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