PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK05967.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 81aa MW: 9612.05 Da PI: 8.8722

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05967.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.2	2.9e-13	5	63	36	94
EEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 36 ltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l++ + ++W++++ r+ + + l+ GW++F+ +n+LkegD++vF+l+++ +++ v+ PK05967.1 5 LVVHGNETQKWRIQCLPRRDQPScRELSYGWSKFAMDNNLKEGDVCVFELVEK-GENIVL 63 67788899*****54333333345899******************9974.443344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.434	1	71	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-11	5	65	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.53E-13	5	66	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.8E-13	6	65	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.80E-11	13	68	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
GFVHLVVHGN ETQKWRIQCL PRRDQPSCRE LSYGWSKFAM DNNLKEGDVC VFELVEKGEN 60 IVLKVWIYYA REGQWRKGLK Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5EWA5	3e-26	A0A2P5EWA5_TREOI; B3 DNA binding domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21791	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-10	B3 family protein