PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK05866.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | HSF | ||||||||
Protein Properties | Length: 513aa MW: 56031.2 Da PI: 4.5355 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 3.8e-36 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++e++sws ++nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+ PK05866.2 45 FLSKTYDMVDDSATDEIVSWSPTNNSFVVWNPPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIN 132 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k PK05866.2 133 RRKP 136 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-39 | 39 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.8E-36 | 40 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.4E-63 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.3E-32 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
XPILGQMDGA TGGGEAPSSA GGGSQPAVPA PAPAPIPNAN APPPFLSKTY DMVDDSATDE 60 IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH SNFSSFVRQL NTYGFRKVDP DRWEFANEGF 120 LRGQKHLLKS INRRKPAHGH SQQQPQPSHG QNTVGACVEV GKFGLEEEIE RLKRDKNVLM 180 QELVRLRQQQ QSTDNQLQTM VQRLQGMEQR QQQMMSFLAK AVQSPGFLAQ FVQQQNESSR 240 RISEANKKRR LRQEVVAESN LSAASDGQIV KYQPPMNESA KAMLRQMVKV EPSSGMDTFN 300 NSTDCFLISD RSSSSSSAAV DSRSSSCRVS GVTLREVLPT SGQTSSVPVS SGVTAPAVSE 360 SSPQSLTSEK VTTAQFPDIS MLVGSQNAPS LPISQGDVVM PELSQMPEMV PEDNFLSNET 420 GGFLDPESLG LDGSMSINLD DIAPDPDIDA LLESTTFWDD LLLQSPMAEE LSPEGTTKDI 480 DEVQPKENGW NKTQNMDNLT EKMGLLTSDG KEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-26 | 37 | 134 | 18 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-26 | 37 | 134 | 18 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-26 | 37 | 134 | 18 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096952.1 | 0.0 | heat shock factor protein HSF8 | ||||
Swissprot | Q40152 | 1e-179 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A2P5ASY7 | 0.0 | A0A2P5ASY7_TREOI; Heat shock transcription factor | ||||
STRING | XP_010096952.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-121 | heat shock transcription factor A1D |
Publications ? help Back to Top | |||
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