PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK05449.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 60aa MW: 6825.54 Da PI: 9.3457

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK05449.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	2	18	9	25
GGGTS--TTTTT-SS-S CS zf-CCCH 9 fartGtCkyGdrCkFaH 25 +++ G C++GdrC++ H PK05449.1 2 YFKIGACRHGDRCSRLH 18 8999************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.995	1	21	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	2	18	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
XYFKIGACRH GDRCSRLHTK PSISPTLLLS NMYQRPDMLT TPGVDTQGQS LDPRKIQDNF

Functional Description ? help Back to Top
Source	Description
UniProt	Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096852.1	3e-35	splicing factor U2af small subunit B
Refseq	XP_010113116.1	2e-37	splicing factor U2af small subunit B
Swissprot	Q9S709	2e-29	U2AFA_ARATH; Splicing factor U2af small subunit A
TrEMBL	A0A2P5BW19	2e-34	A0A2P5BW19_TREOI; U2 auxiliary factor small subunit
TrEMBL	A0A2P5C4W4	2e-34	A0A2P5C4W4_PARAD; U2 auxiliary factor small subunit
TrEMBL	W9SF68	4e-36	W9SF68_9ROSA; Splicing factor U2af small subunit A
STRING	XP_010096852.1	1e-34	(Morus notabilis)
STRING	XP_010113116.1	7e-37	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25409	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44785.1	1e-17	C3H family protein

Publications ? help Back to Top
Day IS, et al. Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing. Plant J., 2012. 71(6): p. 936-47 [PMID:22563826] Kim DW,Jeon SJ,Hwang SM,Hong JC,Bahk JD The C3H-type zinc finger protein GDS1/C3H42 is a nuclear-speckle-localized protein that is essential for normal growth and development in Arabidopsis. Plant Sci., 2016. 250: p. 141-153 [PMID:27457991] Park HY, et al. The Arabidopsis splicing factors, AtU2AF65, AtU2AF35, and AtSF1 shuttle between nuclei and cytoplasms. Plant Cell Rep., 2017. 36(7): p. 1113-1123 [PMID:28432478]