PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04891.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 496aa    MW: 56886.3 Da    PI: 9.1842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04891.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.14.9e-1619105396
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                k+   + +l+++ l +pkkf++++g  ++ s  + ++ + g +W++ l  +kk++ ++++kGW +F+k  gLk g +++F+++g+sef  +  +
  PK04891.1  19 KII-FHGTLRENKLHIPKKFTAKYG--ETLSNWVLIKLPCGSKWKMGL--TKKDENIWFEKGWLDFAKHYGLKRGSMITFRYEGNSEF--YAVI 105
                444.455677788***********9..45888999999**********..**********************************9998..5555 PP
2B364.41.7e-20216316199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffkv +++++   +++ lp +fa+++ g++ ++  l+l +  gr+W v++++   +k  + ++++GW  F+k+n+LkegD++vF + ++++f++ v +fr
  PK04891.1 216 FFKVVMQPHYVHGHQMNLPYNFAKKYLGETCSNAVLKLSSGYGRTWFVEHKFgvYNKVPSSIFKAGWPVFAKDNNLKEGDICVFVMLEEMKFTFEVVIFR 315
                99************************77777888999999999*******9988455455789**********************9999*********99 PP

                S CS
         B3  99 k 99 
                 
  PK04891.1 316 V 316
                6 PP
3B351.71.5e-16371467198
                EEEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk+ + ps+ ++++ l +p +f+++h +k+ +   +   ++ g  W ++++ r    r  ++ GW++F+k+n+Lk+gD+++F+l ++s+  ++v++f+
  PK04891.1 371 FFKIVIqPSSLNSRSSLGIPIEFVRRHLHKE-G-DAILSVSKGGGYWPIEIKTREVNTRADFKCGWNKFAKENDLKVGDVCIFELLKKSKNLFRVSIFS 467
                5666650555566699***********6663.3.3577778999*******9999999999***********************998877778888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2112107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-2313116IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-1515107No hitNo description
PROSITE profilePS5086312.99916109IPR003340B3 DNA binding domain
SMARTSM010196.8E-1317109IPR003340B3 DNA binding domain
PfamPF023622.5E-1318106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20210316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19211317IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-18216316IPR003340B3 DNA binding domain
PROSITE profilePS5086313.465216317IPR003340B3 DNA binding domain
CDDcd100178.46E-20216315No hitNo description
SMARTSM010192.0E-17216317IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-20364467IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-23367467IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-18370467No hitNo description
PfamPF023621.2E-14371467IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734372469IPR003340B3 DNA binding domain
SMARTSM010196.0E-15372469IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSGGDSKQTM FSSTPHFFKI IFHGTLRENK LHIPKKFTAK YGETLSNWVL IKLPCGSKWK  60
MGLTKKDENI WFEKGWLDFA KHYGLKRGSM ITFRYEGNSE FYAVIFDIST VEINYPSVPT  120
NLVVSSIDSE LKIQVVEKDS VEVLDEYSSP CSRPHKKMRT QSNPSCRKLE SETEGEKDLH  180
LSTEPQRCEI ITPMKSLSGR DEALQQAIDF ESRLPFFKVV MQPHYVHGHQ MNLPYNFAKK  240
YLGETCSNAV LKLSSGYGRT WFVEHKFGVY NKVPSSIFKA GWPVFAKDNN LKEGDICVFV  300
MLEEMKFTFE VVIFRVSTTT NSNNLMSSEH KDSMDEKTVT PKPKKQQQPH FSVIERAKIL  360
ERVQFKSEYP FFKIVIQPSS LNSRSSLGIP IEFVRRHLHK EGDAILSVSK GGGYWPIEIK  420
TREVNTRADF KCGWNKFAKE NDLKVGDVCI FELLKKSKNL FRVSIFSDDD DAYNNKKCQV  480
GASKPKVEVG EELAMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1420031732143B3 domain-containing transcription factor VRN1
4i1k_B2e-1420031732143B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-43B3 family protein