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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK04548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | LBD | ||||||||
Protein Properties | Length: 184aa MW: 20131.3 Da PI: 7.0313 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 58.5 | 1.9e-18 | 28 | 103 | 25 | 100 |
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +q++++ +++k++G++ +++l++a p ++r+d+++sl+yeA+ r+ +P++G++g++++++++l+++++e++l++e+ PK04548.1 28 SQSNATLFLAKFYGRAGLINLINAGPLHRRPDIFKSLLYEACGRIVNPISGSTGLVQSGSWHLCEAAVEAVLRGEP 103 678999***************************************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.156 | 2 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-13 | 28 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDVEFSGEGA PRTVPSDLVF SGSNPXLSQS NATLFLAKFY GRAGLINLIN AGPLHRRPDI 60 FKSLLYEACG RIVNPISGST GLVQSGSWHL CEAAVEAVLR GEPIKPVSDE LVGNLSCDIR 120 HVAKRESSVL CDRLKVQTRQ RLRRKKVAKV EESETEFGTE SAHLVLSGPP VSHDSEEETR 180 LQQX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 149 | RLRRKKVAKV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882967.1 | 9e-52 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9ZW96 | 1e-43 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A2P5F9N5 | 2e-73 | A0A2P5F9N5_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | EOY21024 | 2e-47 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25395 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 4e-46 | LOB domain-containing protein 40 |