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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK04509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 85aa MW: 9583.25 Da PI: 10.5615 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.00047 | 10 | 29 | 6 | 25 |
HHHHHHHHHHHHHHHHHHHC CS HLH 6 nerErrRRdriNsafeeLre 25 erEr R+d i s f+ Lre PK04509.1 10 DERERERMDAIDSVFDPLRE 29 58****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF103456 | 8.63E-13 | 21 | 81 | IPR023391 | Protein translocase SecE domain |
Gene3D | G3DSA:1.20.5.820 | 1.8E-7 | 23 | 74 | IPR023391 | Protein translocase SecE domain |
Hamap | MF_00422 | 12.579 | 25 | 80 | IPR022943 | Preprotein translocase subunit SecE |
TIGRFAMs | TIGR00327 | 1.1E-15 | 27 | 82 | IPR008158 | Protein translocase SEC61 complex, gamma subunit |
Pfam | PF00584 | 2.8E-12 | 29 | 81 | IPR001901 | Protein translocase complex, SecE/Sec61-gamma subunit |
PROSITE pattern | PS01067 | 0 | 30 | 58 | IPR001901 | Protein translocase complex, SecE/Sec61-gamma subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006605 | Biological Process | protein targeting | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0015450 | Molecular Function | P-P-bond-hydrolysis-driven protein transmembrane transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
VKAVAGKNGD ERERERMDAI DSVFDPLREF SKDSIRLVKR CHKPDRKEFS KVALRTAIGF 60 VVMGFVGFFV KLIFIPINNI IVGSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2wwb_B | 2e-29 | 17 | 83 | 1 | 67 | PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA |
3j7q_2 | 2e-29 | 17 | 83 | 1 | 67 | Sec61 gamma subunit |
3j7r_2 | 2e-29 | 17 | 83 | 1 | 67 | Sec61 gamma subunit |
4cg5_B | 2e-29 | 17 | 83 | 1 | 67 | PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA |
4cg6_B | 2e-29 | 17 | 83 | 1 | 67 | PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA |
4cg7_B | 2e-29 | 17 | 83 | 1 | 67 | PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for protein translocation in the endoplasmic reticulum. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215225.2 | 2e-42 | uncharacterized protein LOC18784392 | ||||
Swissprot | P38385 | 1e-40 | SC61G_ORYSJ; Protein transport protein Sec61 subunit gamma | ||||
TrEMBL | A0A251Q7Z8 | 5e-41 | A0A251Q7Z8_PRUPE; Uncharacterized protein | ||||
STRING | Gorai.007G073400.1 | 6e-41 | (Gossypium raimondii) | ||||
STRING | AES99725 | 8e-41 | (Medicago truncatula) | ||||
STRING | XP_007148544.1 | 5e-41 | (Phaseolus vulgaris) |
Publications ? help Back to Top | |||
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