PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04274.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family CO-like
Protein Properties Length: 372aa    MW: 42195.9 Da    PI: 6.1386
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04274.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07648339
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                r+C+ +++  + l+C+ ++  lC +C  e H g       H++
  PK04274.1  6 RRICDYCNDATALLYCRADSAKLCFTCDREVH-GtnqlftkHSR 48
               689*****************************.54677777766 PP
2zf-B_box26.31.5e-084893242
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               + + C+ +++ ++++fC + ++ lC++C  e H +      H+++pl
  PK04274.1 48 RSQLCDACHDSPASIFCSSESSVLCQNCDWERH-NpslssvHDRRPL 93
               5689*****************************.5488889988775 PP
3CCT591.6e-20325367143
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                Re a++RYkeKrktR++eK irYesRK++Ae+R R+KGrF+k 
  PK04274.1 325 REGAISRYKEKRKTRRYEKCIRYESRKVRAENRIRIKGRFAKI 367
                99***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.234451IPR000315B-box-type zinc finger
SMARTSM003369.6E-13451IPR000315B-box-type zinc finger
PfamPF006433.0E-5648IPR000315B-box-type zinc finger
CDDcd000213.39E-6751No hitNo description
PROSITE profilePS5011910.7934793IPR000315B-box-type zinc finger
PfamPF006434.5E-64992IPR000315B-box-type zinc finger
CDDcd000213.91E-65193No hitNo description
SMARTSM003360.0855293IPR000315B-box-type zinc finger
PROSITE profilePS5101714.455325367IPR010402CCT domain
PfamPF062037.9E-15325366IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDSERRRICD YCNDATALLY CRADSAKLCF TCDREVHGTN QLFTKHSRSQ LCDACHDSPA  60
SIFCSSESSV LCQNCDWERH NPSLSSVHDR RPLEGFNGCP SVTDLLGILG FDDFDKKSLI  120
SNEERDGSSG FQPDDFLDLS LWDTPSIVSL DDFIVSGSSH NFQAMGIPPL PKNRNAVCGQ  180
YKEEVIAQLQ KLAKIEPNTN FDNGDTTKFL NSFKSLVPEQ SVQPGRACID NAGAEPVTVP  240
TYETPSCQWT IDGGETADQK VLVDKSFSSH LKRSYKDFEK HSEIDDTWCH VNDDGHNEQP  300
QHPMNSRAFS DFQKVPSYEL TSQEREGAIS RYKEKRKTRR YEKCIRYESR KVRAENRIRI  360
KGRFAKIDRA GM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112745.11e-155zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2P5FFU70.0A0A2P5FFU7_TREOI; Zinc finger-domain containing protein
STRINGXP_010112745.11e-155(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-76B-box type zinc finger protein with CCT domain