PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04158.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 893aa    MW: 97919.5 Da    PI: 6.9728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04158.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18340439198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+++
  PK04158.1 340 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGKLVMGF 437
                89**************************555566778***************9989999999***9.********************766.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  PK04158.1 438 RK 439
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-31337447IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19337439IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-22338439No hitNo description
PROSITE profilePS5086311.321340441IPR003340B3 DNA binding domain
SMARTSM010194.8E-21340441IPR003340B3 DNA binding domain
PfamPF023621.3E-15340439IPR003340B3 DNA binding domain
PROSITE profilePS5105012.152568618IPR011124Zinc finger, CW-type
PfamPF074962.6E-10573615IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MSTASSSSPA PKVCYNSECK ELKPERPRKG WRLRSGELAD LCDRCASAFE EGRFCETFHG  60
NASGWRCCES CGKRIHCGCI VSIHAFTLLD PGGIECITCA RKNVFLTSNP TWAQSFLFPS  120
ERLKDLSMKN WNQLAGSGPV PWRQAPSLFS SSIPSSEIHS RVPYEVDISS AINKLGNGER  180
ISGCSLDKRK VEDLSERLHN GSLKLGAQEI HENGITGKNC DDQISSCLSM SQQSSSVKED  240
PSPPQFGLLV PFSSTIETND QFVVSGTNLR PNPPPSLSKQ FVGNLQNGVD PSGETQIRNA  300
RPRADARGRN QLLPRYWPRF TDQELQQITG DSNSVITPLF EKMLSASDAG RIGRLVLPKK  360
CAEAYFPPIS QPEGLPLKVQ DAKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD  420
IVTFSRLEPE GKLVMGFRKA SAAPPSDQEN ETNKNANGVL ARGDAELADP SCWSKVDKSG  480
YIAKEVLGGA KALISRKRKS STLGSKSKRL RIENEDMMEL KLTWEEAQGL LCPPTNHIPS  540
VVVIEGFEFE EFEDAPVLGK PTIFSTNNGE KVQWAQCEDC FKLRKLPADA PVPPKWTCSD  600
NSWDPQRASC SAAQELTSEE LEDLLPSTVS AASKKMKAAK QDVENVEALE GLDTLANLAI  660
LGEGDSLPAS AQATTKHPRH RPGCSCIVCI QPPSGKGPKH KPSCTCNVCL TVKRRFRTLM  720
MRREKKQSEK EAETTRKKQQ LLLPYKLQDD TVTSNSNAGN SPKQNVDVLE ISDDDPSKVK  780
LSTSPFKGQI DLNIQPEREE ELSPSSDSGS MMKLLHDATE KYIKEHRYLK LPPGSSSVFG  840
ENPSGNVMQC DGGETIGEQH TNGINLSSNH HNADEDSSAA LSMKAAVSST PAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-643184432127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494499SRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4887232e-46AM488723.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X113969.14, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018896.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2P5G0Y60.0A0A2P5G0Y6_TREOI; Zinc finger-type transcription factor (Fragment)
STRINGXP_008224939.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-148HSI2-like 1