PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK04145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | G2-like | ||||||||
Protein Properties | Length: 408aa MW: 45782.1 Da PI: 6.8544 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.2e-33 | 257 | 312 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ PK04145.1 257 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 312 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.115 | 254 | 314 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-18 | 254 | 315 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-29 | 255 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-27 | 257 | 312 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.4E-8 | 259 | 310 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGSIPSELSL DFRASYVPKS IHEFLNEVST IENVPERASK LGDFVRRLEE EMKKIDAFKR 60 ELPLCMILLS DAILTLKKES SQCAVTTNPQ PVLEEFIPMK KDCEEEDEER EEHKKNKNEK 120 DSRDKKNWMS SVQLWNTDDI SSGDHLNKNS KQNSMTQTKM NDEKILKNED PFPSCRNRSS 180 ERSFAPFIKP YSGFLVRKEE KDEFSIPGLS LLTPGLKNPK EESGCGNARS NSGRAVSSSP 240 ANVHSNLRIG SQQTARKQRR CWSPELHRRF VNALQQLGGS QVATPKQIRE LMQVDGLTND 300 EVKSHLQKYR LHTRRVPSGT SAPANQSVVV LGGLWLGQDQ YGDSSKASSS QSGSPQGPLQ 360 LAATRGGSPT TGDEDSMQDD DDDDDAKSEG FSWKNHLHKP LKDDVHRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-14 | 257 | 310 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107986.1 | 0.0 | transcription factor HHO6 | ||||
TrEMBL | A0A2P5FZ46 | 0.0 | A0A2P5FZ46_TREOI; GARP transcription factor | ||||
STRING | XP_010107986.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 4e-55 | G2-like family protein |