PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04004.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family CAMTA
Protein Properties Length: 289aa    MW: 32259.9 Da    PI: 5.3524
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04004.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-198.65e-3146556118
       CG-1  56 swkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                +w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n+ fqrr+yw+Lee+ ++iv+vhylevk
  PK04004.2   4 NWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEYFQRRSYWMLEED-KNIVFVHYLEVK 65 
                8*************************************************.*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010765.0E-14165IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143745.208170IPR005559CG-1 DNA-binding domain
PfamPF038593.1E-26464IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDXNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEDNE YFQRRSYWML EEDKNIVFVH  60
YLEVKGNRTN VGGIRETDDS SSSLREGSPQ TSSSSTSQYK APSGSTDYTS PSPNSCLTSL  120
CEDADSGDIH QANSRLPPFA ESRQLQFGDR PLMNNLDAGF SLHHSSNHRK EQSSIHVEDY  180
IPQFKEETPN FTNPVAGSQN SLGLGTWEEI LEQCSTGYNT VPSHVSVSPS QHAFVGVAHD  240
RENVIQGKFL AREIVKEELE NSLPSDSTWQ FSSGDNVPSH LKGLVEQSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019885.11e-116calmodulin-binding transcription activator 2
TrEMBLA0A2P5E8N41e-135A0A2P5E8N4_TREOI; Notch
STRINGXP_010094157.11e-116(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142411819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.23e-42Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains