PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK04004.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family CAMTA
Protein Properties Length: 1079aa    MW: 121872 Da    PI: 5.9043
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK04004.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.34.1e-55191352118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e ++rwl++ ei++iL n++ ++++ e+++rp+sgsl+L++r ++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n+ fqrr+yw
  PK04004.1  19 LSEaQHRWLRPAEICEILRNHQTFRISPEPPSRPPSGSLFLFDRNVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEYFQRRSYW 118
                45559*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                +Lee+ ++iv+vhylevk
  PK04004.1 119 MLEED-KNIVFVHYLEVK 135
                *****.*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.1815140IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7618135IPR005559CG-1 DNA-binding domain
PfamPF038593.9E-5021134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.2E-5493587IPR013783Immunoglobulin-like fold
PfamPF018331.7E-4501587IPR002909IPT domain
SuperFamilySSF812967.8E-14501587IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.202.8E-19681798IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-20685796IPR020683Ankyrin repeat-containing domain
CDDcd002042.76E-18690794No hitNo description
PROSITE profilePS5029720.367690806IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.816702734IPR002110Ankyrin repeat
SMARTSM002481200702731IPR002110Ankyrin repeat
PfamPF127966.8E-8707796IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.858735767IPR002110Ankyrin repeat
SMARTSM002480.0024735764IPR002110Ankyrin repeat
SMARTSM002481300774803IPR002110Ankyrin repeat
SMARTSM0001512908930IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.29E-8908959IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.547911938IPR000048IQ motif, EF-hand binding site
PfamPF006120.0068912929IPR000048IQ motif, EF-hand binding site
SMARTSM000150.017931953IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.194932956IPR000048IQ motif, EF-hand binding site
PfamPF006124.8E-4934953IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MAERGSYGIS PRLDIQQLLS EAQHRWLRPA EICEILRNHQ TFRISPEPPS RPPSGSLFLF  60
DRNVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEDNE YFQRRSYWML  120
EEDKNIVFVH YLEVKGNRTN VGGIRETDDS SSSLREGSPQ TSSSSTSQYK APSGSTDYTS  180
PSPNSCLTSL CEDADSGDIH QANSRLPPFA ESRQLQFGDR PLMNNLDAGF SLHHSSNHRK  240
EQSSIHVEDY IPQFKEETPN FTNPVAGSQN SLGLGTWEEI LEQCSTGYNT VPSHVSVSPS  300
QHAFVGVAHD RENVIQGKFL AREIVKEELE NSLPSDSTWQ FSSGDNVPSH LKGLVEQSSN  360
LDLSFDIGNT LFEKNTLDSN LSTPDQFSTH HGQQNERRVQ NDLQVQFTNM ESQSSMPYKF  420
DNNINTDGNV NYNFTLRQQL LDGEEGLKKV DSFSRWISKA LGDVDLQMQS SSGIPWSTVE  480
CGSADDDSSL SPSISQDQLF TIIDFSPKWA FTDSQPEVLV FGNFLKSQQE VAKYRWSCMF  540
GEVEVAAEVL AYGILCCQAP PHRDGLVPFY VTCSNRLACS ELREFNYKFG STKDIEITDI  600
YDGNTIELSL HLRLEKLLSL AVNPSSFSFK IATEKRNLIN KIISLKEEDE GYQQVDQTND  660
TGFSQYEVRD HLLTKLMKEK LYSWLLHKTI EDGKGPNILD DDGQGVLHLA AALGYDWAIK  720
PIVTAGVSIN FRDINGWTAL HWAAFYGREQ TVAYLVSLGA APGFVTDPSP EFLSGRTPAD  780
LASVNGHKGI SGFLAESSLT SHLSSLELVD SKEDGVVESS ATKAIQTVSE RTTTPRTYGE  840
MPDALSLKDS LTAVRNATQA ADRIHQMFRM QSLERRRLNE YGDDGLLDER ALSLLAGKSS  900
KAGPNDGQTY TAAVQIQKKY RGWKKRKEFL IIRQRIVKIQ AHVRGHQVRK QYRAITWSVG  960
ILEKVILRWR RKGSGLRGFR PDAVNKESVM QSLPLKEDDY DFFKEGRKQT EERLQKALTR  1020
VKSMVQYPEG RAQYRRVLNV VEGLRETKTD FTMNESEETT YDDLIEIDKL LDDDSFMYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A2e-1169079424122Engineered Protein
4hb5_B2e-1169079424122Engineered Protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019885.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A2P5E8N40.0A0A2P5E8N4_TREOI; Notch
STRINGXP_010094157.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]