PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK03977.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 208aa MW: 22923.2 Da PI: 7.9956

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03977.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.8	1.9e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C ++Cvl+ ++ p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++ PK03977.1 2 SCNGCRVLRKGCGESCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQAAVETV 101 6***********************************************************************************************9987 PP DUF260 96 l 96 l PK03977.1 102 L 102 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.701	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSCNGCRVLR KGCGESCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET VLCGGVLRPM QGVLMQKLEE 120 SSDMLAVAAD TSSWPSSSYH YFPSLPSIYD PRQELYYSGA RGSSGIFPMS TEKLIRRDSI 180 SRSSEESVMT KSFGIRDRKE QKLLNLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885030.1	7e-89	LOB domain-containing protein 39-like
Refseq	XP_015900491.1	7e-89	LOB domain-containing protein 39-like
Swissprot	Q9SZE8	4e-62	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A2P5BZQ4	1e-114	A0A2P5BZQ4_PARAD; Lateral organ boundaries domain containing protein
TrEMBL	A0A2P5EZY5	1e-114	A0A2P5EZY5_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_010092590.1	1e-87	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-62	LOB domain-containing protein 39