PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03938.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 481aa    MW: 53876.6 Da    PI: 8.8676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03938.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.31.9e-20113203199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k l++s+v +  ++ lp +f+++h  +  e++t+tlede+g+++ vk+i  k++    l++GW++F  a++L egD++vF+l++ ++f  +v v+r+
  PK03938.1 113 FVKSLVRSHVASCFWMGLPGPFCKSHLPD--EDTTITLEDEDGKRYHVKYIAYKTG----LSAGWRQFSVAHKLLEGDVLVFQLVEPTKF--KVYVIRA 203
                89************************533..6679***************666665....9**********************9876666..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-22106204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-24107204IPR015300DNA-binding pseudobarrel domain
CDDcd100178.52E-28111202No hitNo description
PROSITE profilePS5086313.775113204IPR003340B3 DNA binding domain
SMARTSM010191.2E-23113204IPR003340B3 DNA binding domain
PfamPF023621.9E-17113203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
METASFEHEI PEDVTLAQLS KSPRLKLKPS SSSSSNSAKK KNLKEKEEEL CIVKKRNPET  60
KFVVSGHSRN SLNTPTPSKA AIHASPLSGE AKSSAVIRGQ EVRSNLETEF PSFVKSLVRS  120
HVASCFWMGL PGPFCKSHLP DEDTTITLED EDGKRYHVKY IAYKTGLSAG WRQFSVAHKL  180
LEGDVLVFQL VEPTKFKVYV IRANDLTEVD GALGLLNLDC QSKQSDADKD YAELGAIECH  240
NTNRKRQKSL PLTVVEKKKK KKTVSPRSAP RKPADQSEND SEEVASEVLE ESKILGPAFQ  300
FKDMKSFKNF NILVDGMLVD SEIPEDIRRA YYKLCSSQKA FLHDNIIKGM NHKLIVGTII  360
ETVKVASAIK ACKLTTSRGD FEAWDKSLRA FELLGMNVGF LRSRLSRLTG LSRDSEVCVD  420
AKMYAESRKE RAEVETGMKD IETKIVELRV ACVRFDAAIE KLGSQAESYE HKFHKEVKAP  480
W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243261RKRQKSLPLTVVEKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020017.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2P5FYB60.0A0A2P5FYB6_TREOI; B3 DNA binding domain containing protein
STRINGXP_010094372.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-33B3 family protein