PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03768.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 506aa MW: 55046.6 Da PI: 8.5537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03768.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.8e-05	400	438	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq PK03768.1 400 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 438 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.947	388	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-11	398	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-5	398	442	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-9	402	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
XVVGSPHPLL LVPLGATPSC YGFGSTTHHT WSSSPTTTTT TPSTFNINNS FGNTINPNYN 60 YDVMVSSESS KRAVKSSRDN IDHHDNIISI NSSNMVNLEF GFPWTNCNPS TTTTTSTTVT 120 HDQSASYDMN LAAKIEEESE SSFPKFTEIL NSCTSTTTSS TSPLSNSTNH VNNDDYAHFF 180 LKPGDLSSST NNNNSSISSS NVTDHHHHHK NLMVKTLSYS TAQQVVNVEN QQISSSTTSE 240 FDSNNNNNNN NNNMTGGSSF GGLMAAVGSR GQFSQIYPSI NISNLFNKLS PSPSSNISVT 300 CSLDINSIGH DHHHNQSFRE STPSNNFCGS PLQLHQMHLP QRPSSGLSKR KPSFINSEIT 360 VAKRGGRGSL IEPKIRTMQS APNKKPRTES RSACPPFKVR KEKLGDRIAA LQQLVSPFGK 420 TDTASVLMEA IGYIKFLQNQ VETLSVPYMK SSRKKIIKST QRGVKEDYGS VSDEKGDLRS 480 RGLCLVPLSC MSYVTGDGGG GSMWPN

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

XVVGSPHPLL LVPLGATPSC YGFGSTTHHT WSSSPTTTTT TPSTFNINNS FGNTINPNYN  60
YDVMVSSESS KRAVKSSRDN IDHHDNIISI NSSNMVNLEF GFPWTNCNPS TTTTTSTTVT  120
HDQSASYDMN LAAKIEEESE SSFPKFTEIL NSCTSTTTSS TSPLSNSTNH VNNDDYAHFF  180
LKPGDLSSST NNNNSSISSS NVTDHHHHHK NLMVKTLSYS TAQQVVNVEN QQISSSTTSE  240
FDSNNNNNNN NNNMTGGSSF GGLMAAVGSR GQFSQIYPSI NISNLFNKLS PSPSSNISVT  300
CSLDINSIGH DHHHNQSFRE STPSNNFCGS PLQLHQMHLP QRPSSGLSKR KPSFINSEIT  360
VAKRGGRGSL IEPKIRTMQS APNKKPRTES RSACPPFKVR KEKLGDRIAA LQQLVSPFGK  420
TDTASVLMEA IGYIKFLQNQ VETLSVPYMK SSRKKIIKST QRGVKEDYGS VSDEKGDLRS  480
RGLCLVPLSC MSYVTGDGGG GSMWPN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5F6H6	1e-115	A0A2P5F6H6_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-53	bHLH family protein