PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03443.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family BBR-BPC
Protein Properties Length: 350aa    MW: 39171.3 Da    PI: 9.7791
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03443.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind384.81.4e-11753501301
  GAGA_bind   1 mdddgsre..rnkg.yye...........paaslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                mdd g+re  r+kg +++           +++ + +++   +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a++erdn++++l
  PK03443.1   5 MDDAGHREngRHKGdQFKptqgqvsgisfQNTWMMQHQptMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAFLQRDAAIAERNNAMLERDNAIATL 104
                99****9999****************9994433433331146********************************************************** PP

  GAGA_bind  85 llvensla....salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                +++ens++    s++p+g+q+++g+k++++ q + +  +++++ +++ re++++++lp++  +++a ++++ k+ +++k        ++ k+ +k+ +k 
  PK03443.1 105 QYRENSMSngnmSSCPPGCQISRGVKHLHHPQPHVQqmQHINEASYGNREMNTNDSLPMSADTSDAVKSRRGKRIKEPKA------ISPSKRAPKPPRKI 198
                ******9999999*****************99944446889999**************9988777777666665444443......22333333333333 PP

  GAGA_bind 179 kkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249
                kke+++ +                             sk+++k +dl+ln+v +Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP +++
  PK03443.1 199 KKENEELNkmtflksqewkseqsmigegdddnkqlvvSKSDWKGQDLGLNQVIYDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTMSMYPLPSVPN 298
                3333321123344455688899****************************************************************************** PP

  GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                +r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
  PK03443.1 299 KRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 350
                ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.6E-1025350IPR010409GAGA-binding transcriptional activator
SMARTSM012263.8E-1615350IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
GGFAMDDAGH RENGRHKGDQ FKPTQGQVSG ISFQNTWMMQ HQPTMKQIMA IMAERDAAIQ  60
ERNLALSEKK AALAERDMAF LQRDAAIAER NNAMLERDNA IATLQYRENS MSNGNMSSCP  120
PGCQISRGVK HLHHPQPHVQ QMQHINEASY GNREMNTNDS LPMSADTSDA VKSRRGKRIK  180
EPKAISPSKR APKPPRKIKK ENEELNKMTF LKSQEWKSEQ SMIGEGDDDN KQLVVSKSDW  240
KGQDLGLNQV IYDESTMPAP VCSCTGVLRQ CYKWGNGGWQ SSCCTTTMSM YPLPSVPNKR  300
HARVGGRKMS GSAFNKLLSR LAAEGHDLSN PVDLKDNWAK HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884822.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015884824.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015884825.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015884826.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024930418.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024930420.10.0protein BASIC PENTACYSTEINE6
RefseqXP_024930421.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-156BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2P5DBV20.0A0A2P5DBV2_PARAD; GAGA-binding transcriptional activator
STRINGXP_010105257.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-143basic pentacysteine 6