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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK03412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 164aa MW: 17761.4 Da PI: 9.2373 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 40.9 | 4.9e-13 | 4 | 29 | 33 | 58 |
ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRreve 58 g+eg+ ++lkCaAC CHRnFHR+e++ PK03412.1 4 GAEGSLDGLKCAACSCHRNFHRKETD 29 77899******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.4E-10 | 2 | 28 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-7 | 2 | 30 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.93E-14 | 100 | 164 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 107 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-19 | 113 | 164 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
XAAGAEGSLD GLKCAACSCH RNFHRKETDS GGITADPYGG PLVPHHYPHP QLSPYYRTPT 60 GYLHVAPHHR PLALPSTSGG GAGSHSREDQ EDVSNPSGGG GSGFGFGSGS SSKKRFRTKF 120 SQEQKDRMLA LAERLGWRIQ KQDEAVVQQF CNETGVRRQV LKVW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 112 | 164 | 16 | 68 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021802442.1 | 3e-74 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 2e-53 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 3e-53 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2P5ADF1 | 4e-84 | A0A2P5ADF1_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010266504.1 | 2e-73 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-44 | homeobox protein 22 |
Publications ? help Back to Top | |||
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