PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK03295.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 160aa MW: 17366.9 Da PI: 8.8462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03295.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	52	89	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L++l+ + +K + a++L +A+ YI+ Lq PK03295.1 52 KEKLGERITALQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 89 567778999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.141	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0064	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-8	50	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-11	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-5	51	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
VSLSTMSKSN RKRNGSDQES VHCVSTATTI TCTVPNQTLP KKIKTVATTM RKEKLGERIT 60 ALQQLVSPFG KTDTASVLHE AMGYIRFLQD QVQVLCSPYL QRLPCVPDKE GGENGGKKDL 120 RSRGLCLIPV ECTLHVADTN GADLWSPAMA SNVSSSMKEA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024932852.1	1e-69	transcription factor bHLH113 isoform X2
Swissprot	Q9LT67	3e-42	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A2P5DN67	5e-73	A0A2P5DN67_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_008236390.1	3e-62	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10321	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	4e-44	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]