PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03289.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-X1
Protein Properties Length: 441aa    MW: 49332.6 Da    PI: 7.8656
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03289.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.22.7e-06204222120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                CG H+C  lCH+GpCp+Cp+
  PK03289.2 204 CG-HRCLLLCHPGPCPSCPK 222
                **.***************96 PP
2zf-NF-X120.11.4e-06259274419
   zf-NF-X1   4 HkCqklCHeGpCppCp 19 
                H+C+++CH GpCppC+
  PK03289.2 259 HTCSEICHDGPCPPCK 274
                ***************8 PP
3zf-NF-X117.87.1e-06417435119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H C + C+ G+CppC 
  PK03289.2 417 CGRHACRRRCCDGDCPPCT 435
                ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.21E-586164No hitNo description
PROSITE patternPS01359091157IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.81E-6192240No hitNo description
SMARTSM004380.012204222IPR000967Zinc finger, NF-X1-type
PfamPF014227.5E-4204221IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-8246294No hitNo description
SMARTSM004381.7E-4256275IPR000967Zinc finger, NF-X1-type
PfamPF014221.5E-4259274IPR000967Zinc finger, NF-X1-type
CDDcd060082.51E-8300340No hitNo description
SMARTSM004380.002310329IPR000967Zinc finger, NF-X1-type
PfamPF014220.25310328IPR000967Zinc finger, NF-X1-type
CDDcd060089.49E-9354403No hitNo description
SMARTSM004380.025364384IPR000967Zinc finger, NF-X1-type
PfamPF014226.9E-4364383IPR000967Zinc finger, NF-X1-type
CDDcd060085.54E-5407438No hitNo description
SMARTSM004380.0067417436IPR000967Zinc finger, NF-X1-type
PfamPF014226.4E-4417435IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
XLFSKNHAGS PKARIMPDQL RSVMADPPLS DSDADSDNGQ HGCEHTRRHA DLSDSIFRSY  60
FEFTGRSLTT PADLSKIQSF LTSSSSGALS CLICLERIRP SDPTWSCNSL CFAVFHLFCI  120
QSWARQSSDL AALRASTRLP ITANRAAEVS VWNCPKCRSE YTQSQIPKTY FCFCGKLENP  180
PSDDPWVLPH SCGEVCDRGL KHECGHRCLL LCHPGPCPSC PKLVKSRCFC GSVEDVRRCG  240
FKNFSCNKVC SKLLDCRDHT CSEICHDGPC PPCKVRDVYW CQCGKKEEER ECCDRVNFRC  300
ENQCEEMLDC RRHVCSKGCH SGECGPCPLQ GKRTCPCGKR IHEGMSCDVA VPLCGSTCDK  360
VLTCGYHRCP ERCHRGPCIE TCRIVVIKLC RCGSLKKEVP CYQDMACERK CQKLRDCGRH  420
ACRRRCCDGD CPPCTEVCVC I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015877400.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2P5ALY90.0A0A2P5ALY9_PARAD; WD repeat containing protein
TrEMBLA0A2P5EM310.0A0A2P5EM31_TREOI; Zinc finger, NF-X1-type
STRINGXP_009369168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-164sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors