PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK03289.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-X1
Protein Properties Length: 849aa    MW: 95317.8 Da    PI: 8.2445
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK03289.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.15.6e-06189207120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                CG H+C  lCH+GpCp+Cp+
  PK03289.1 189 CG-HRCLLLCHPGPCPSCPK 207
                **.***************96 PP
2zf-NF-X118.35e-06244259419
   zf-NF-X1   4 HkCqklCHeGpCppCp 19 
                H+C+++CH GpCppC+
  PK03289.1 244 HTCSEICHDGPCPPCK 259
                ***************8 PP
3zf-NF-X116.81.5e-05402420119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H C + C+ G+CppC 
  PK03289.1 402 CGRHACRRRCCDGDCPPCT 420
                ******************7 PP
4zf-NF-X119.71.8e-06423447119
   zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                CG      +HkCq++CH+GpC pCp
  PK03289.1 423 CGrklrcnNHKCQSPCHRGPCAPCP 447
                666666669***************8 PP
5zf-NF-X118.93.3e-06629647120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                C+ H+C+ +CH+G+CppC++
  PK03289.1 629 CS-HPCSLPCHPGDCPPCKA 647
                99.***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.74E-571149No hitNo description
PROSITE patternPS01359076142IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.24E-5177225No hitNo description
SMARTSM004380.012189207IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016189206IPR000967Zinc finger, NF-X1-type
CDDcd060084.77E-8231279No hitNo description
SMARTSM004381.7E-4241260IPR000967Zinc finger, NF-X1-type
PfamPF014223.2E-4244259IPR000967Zinc finger, NF-X1-type
CDDcd060087.05E-8285325No hitNo description
SMARTSM004380.002295314IPR000967Zinc finger, NF-X1-type
PfamPF014220.52295313IPR000967Zinc finger, NF-X1-type
CDDcd060082.72E-8339388No hitNo description
SMARTSM004380.025349369IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014349368IPR000967Zinc finger, NF-X1-type
CDDcd060085.05E-8392440No hitNo description
SMARTSM004380.0067402421IPR000967Zinc finger, NF-X1-type
PfamPF014220.0013402420IPR000967Zinc finger, NF-X1-type
CDDcd060082.97E-11419467No hitNo description
PfamPF014222.4E-4423447IPR000967Zinc finger, NF-X1-type
SMARTSM004385.0E-4429448IPR000967Zinc finger, NF-X1-type
SMARTSM0043839486507IPR000967Zinc finger, NF-X1-type
PfamPF014224.6496506IPR000967Zinc finger, NF-X1-type
SMARTSM004389.4597619IPR000967Zinc finger, NF-X1-type
PfamPF014222.4597617IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0024629647IPR000967Zinc finger, NF-X1-type
PfamPF014220.026629646IPR000967Zinc finger, NF-X1-type
SMARTSM004386692713IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MPDQLRSVMA DPPLSDSDAD SDNGQHGCEH TRRHADLSDS IFRSYFEFTG RSLTTPADLS  60
KIQSFLTSSS SGALSCLICL ERIRPSDPTW SCNSLCFAVF HLFCIQSWAR QSSDLAALRA  120
STRLPITANR AAEVSVWNCP KCRSEYTQSQ IPKTYFCFCG KLENPPSDDP WVLPHSCGEV  180
CDRGLKHECG HRCLLLCHPG PCPSCPKLVK SRCFCGSVED VRRCGFKNFS CNKVCSKLLD  240
CRDHTCSEIC HDGPCPPCKV RDVYWCQCGK KEEERECCDR VNFRCENQCE EMLDCRRHVC  300
SKGCHSGECG PCPLQGKRTC PCGKRIHEGM SCDVAVPLCG STCDKVLTCG YHRCPERCHR  360
GPCIETCRIV VIKLCRCGSL KKEVPCYQDM ACERKCQKLR DCGRHACRRR CCDGDCPPCT  420
EVCGRKLRCN NHKCQSPCHR GPCAPCPVMV TISCACGETH FEVPCGTEKD QKPPRCPKRC  480
TIMPLCRHAT KVKPHKCHYG ACPPCRLLCE EEYPCGHMCK LRCHGPKPPP NPEFTLKPKK  540
KKHVRQSECT PGSPCPPCPE LVWRSCVGQH IGADRMMVCS NKMQFSCENL CGNFLPCGNH  600
YCTNSCHALK TQPCEECNLS CEKERTPLCS HPCSLPCHPG DCPPCKALVK RSCHCGSMVH  660
VFECMYYNSL SEKGQMTARS CGGPCHRKLP NCTHLCPETC HPGQCPSPEK CSKKVNVRCR  720
CQTLKKEWQC YEVQAAHRHA GSDPKDIIKS QYGLGLLPCN SDCKIKLQAI DSELQQRKSK  780
AVEVKVPDTE KHVPKRKRRR ERVQETKQIS RLQKVASTIK WLLLFAIILV ALIASLYCGY  840
KGILWLNDW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1794799KRKRRR
2795799RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024682.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2P5EM310.0A0A2P5EM31_TREOI; Zinc finger, NF-X1-type
STRINGXP_010101418.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors