PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK03241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 172aa MW: 19782.4 Da PI: 5.2078 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.9e-14 | 45 | 87 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+Pk + Kl+ a+iL A+eY+k+Lq PK03241.1 45 AERRRRKKLNERLYTLRSLVPKiS------KLDRASILGDAIEYVKDLQ 87 7*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.643 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-18 | 41 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-15 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-11 | 45 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-18 | 45 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.15E-11 | 45 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
EKDSNKQEEG RSNSVSDCSD QIDDEDNGKY RRKSGKSDQC KNLFAERRRR KKLNERLYTL 60 RSLVPKISKL DRASILGDAI EYVKDLQSQA KELQDELEEQ SDNDGLNSNI NGKRNNVLSE 120 TLSRDDTNFR SRPEHEKVQN EFHLETSRSG SISKQNQDSD TTNDKAPQME VT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 35 | 90 | 2 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 51 | RRKSGKSDQCKNLFAERRRRKK |
2 | 45 | 52 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028790.1 | 1e-79 | LOW QUALITY PROTEIN: transcription factor ABORTED MICROSPORES | ||||
Swissprot | Q9ZVX2 | 2e-36 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A2P5EWP8 | 5e-92 | A0A2P5EWP8_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010107648.1 | 1e-78 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4225 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-28 | bHLH family protein |