PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK03075.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 241aa MW: 26061.7 Da PI: 8.5775

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK03075.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.9	2.1e-30	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+ PK03075.1 2 SCNGCRVLRKGCSESCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHMCQAAVETI 101 6*******************9999777889*************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.797	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.3E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHMCQAAVET ILRGGTLRPL PELLGGGGTG 120 TMTATTPTAA SDEASEAEVT CTDIWKVRDP NSGSRFSTSR SRLSPKRKRS DSPAKLRNTA 180 DLDLRLTPIF PVKPTARKAD VRRPVSPSMN SEESETTTCY DSCLADQSAI GGDRKLLNLF 240 F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010086954.1	1e-126	LOB domain-containing protein 39
Swissprot	Q9SN23	1e-91	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2P5D0A6	1e-141	A0A2P5D0A6_PARAD; Lateral organ boundaries domain containing protein
STRING	XP_010086954.1	1e-126	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-73	LOB domain-containing protein 37