PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK03025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 109aa MW: 11907.4 Da PI: 10.3587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40 | 9.7e-13 | 71 | 109 | 2 | 45 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a PK03025.1 71 FFRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPTPEMAAAA 109 69***9.55.6*********854...5***************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.078 | 59 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-10 | 71 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.4E-5 | 71 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-6 | 72 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.62E-16 | 72 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.7E-16 | 72 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 109 aa Download sequence Send to blast |
MANPPTDLPK SDQPPNPSIS PSVIPQSELS PISSENQLPS PVTARPSEDP PPQNPFHSPR 60 TGSASVRKHP FFRGIRCRSG KWVSEIREPK KTTRVWLGTY PTPEMAAAA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028659.1 | 9e-26 | ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A2P5C9W4 | 7e-34 | A0A2P5C9W4_TREOI; AP2/ERF domain containing protein | ||||
STRING | EOY24623 | 5e-21 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12630.1 | 7e-21 | ERF family protein |