PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02804.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 350aa MW: 39011.4 Da PI: 4.5365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02804.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.7	3.4e-47	6	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 l+pGfrFhPtd elv++yLk+kv gk + +i+evdiyk+ PwdLp k ++ +w+fF++r kkya+g+r nra++ gyWk+tgkd++v++ ++e+v PK02804.1 6 LAPGFRFHPTDVELVKYYLKRKVLGKGSTG--TIPEVDIYKYTPWDLPDKSPIKDLKWFFFCPRVKKYASGERMNRAAEGGYWKTTGKDRDVKH-NNEVV 102 579**********************655..7***********88888999**********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g ktLvf++g pkg +tdWvmhey+l PK02804.1 103 GAIKTLVFHTGGPPKGDRTDWVMHEYTL 130 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-55	5	153	IPR003441	NAC domain
PROSITE profile	PS51005	52.023	6	153	IPR003441	NAC domain
Pfam	PF02365	6.6E-26	8	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MRKGFLAPGF RFHPTDVELV KYYLKRKVLG KGSTGTIPEV DIYKYTPWDL PDKSPIKDLK 60 WFFFCPRVKK YASGERMNRA AEGGYWKTTG KDRDVKHNNE VVGAIKTLVF HTGGPPKGDR 120 TDWVMHEYTL MEQGLKNIGV VQDSYVLCVV FKKEGPGPKN GAQYGAPFVE EDWTTDDEND 180 SCLDADPFAI MSVSDVLPPT TGHTASSSRA PESISIEGAP ETVMSETTND DDMVSLLHYF 240 VEEDHPQLNE INKDATNYLA QQQVACPDND IFGGLGNLDN LAGLNWDPNW EDGSISAHNG 300 LSFLELKDLD APLTHGLQSF LWDYEIGNDQ FGADAAAIQN WPSHDDRSPK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MRKGFLAPGF RFHPTDVELV KYYLKRKVLG KGSTGTIPEV DIYKYTPWDL PDKSPIKDLK  60
WFFFCPRVKK YASGERMNRA AEGGYWKTTG KDRDVKHNNE VVGAIKTLVF HTGGPPKGDR  120
TDWVMHEYTL MEQGLKNIGV VQDSYVLCVV FKKEGPGPKN GAQYGAPFVE EDWTTDDEND  180
SCLDADPFAI MSVSDVLPPT TGHTASSSRA PESISIEGAP ETVMSETTND DDMVSLLHYF  240
VEEDHPQLNE INKDATNYLA QQQVACPDND IFGGLGNLDN LAGLNWDPNW EDGSISAHNG  300
LSFLELKDLD APLTHGLQSF LWDYEIGNDQ FGADAAAIQN WPSHDDRSPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	6	159	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	6	159	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	6	159	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	6	159	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-43	6	159	20	174	NAC domain-containing protein 19
3swm_B	7e-43	6	159	20	174	NAC domain-containing protein 19
3swm_C	7e-43	6	159	20	174	NAC domain-containing protein 19
3swm_D	7e-43	6	159	20	174	NAC domain-containing protein 19
3swp_A	7e-43	6	159	20	174	NAC domain-containing protein 19
3swp_B	7e-43	6	159	20	174	NAC domain-containing protein 19
3swp_C	7e-43	6	159	20	174	NAC domain-containing protein 19
3swp_D	7e-43	6	159	20	174	NAC domain-containing protein 19
4dul_A	6e-43	6	159	17	171	NAC domain-containing protein 19
4dul_B	6e-43	6	159	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090859.1	1e-111	NAC domain-containing protein 82
Refseq	XP_024017752.1	1e-111	NAC domain-containing protein 82
Swissprot	Q9FY82	3e-85	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	W9QLV4	1e-109	W9QLV4_9ROSA; NAC domain-containing protein 78
STRING	XP_010090859.1	1e-110	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	4e-84	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]