PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 691aa MW: 76647.1 Da PI: 5.4298 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.4e-08 | 575 | 623 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l PK02666.1 575 AWTLVEVMKLVEGVSKCGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 623 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.129 | 568 | 627 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-12 | 570 | 629 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 572 | 625 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.34E-19 | 574 | 624 | No hit | No description |
SuperFamily | SSF46689 | 1.14E-15 | 574 | 633 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-6 | 575 | 623 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
LRPSYGETLG LSLQLDSTRL ERTLIQFFFT KEKDRATEDY WPNSCSATRL LELSLGPSDI 60 PIPTRKDRVT SMLVCLVACG GFIMETVVGV ENSDEWKFEE SGFFENSTSS LSSPKYIADP 120 VVYKLVRVEC DGRFVPATDD EVMEVEDFLV DDKTEMLVDG GKNAECSSDD GLPSEMLQLD 180 SSEGLPHSGN VKADDEKLTS SLEEVVPSSA LIVDDNCKNL SGSIEELSKP SDEQPDSAPS 240 TSDVCNNQKP DFYKLKGEIC LDNLSIKELH EFFKATFGRE TTVKDKLWLK RRITMGLTNS 300 CDVATTTFTI KDNKLVNKEN EESCKNAEGS VELEVETINN SNNSPTNCDA QMEDHNFVSG 360 KRFNESVEFD FETEDLHAEQ RAAKRVRKPT KRYIEELSEA ESRDYSPKVH SSAKHVGFGS 420 TSPKSCLRPV KSVSFNERIM LTRLDSLGGS GVQVPCVSRI RRSRPRKNIK ALMRFHPSSV 480 GMPTEVVRKA LAVPSSRPDS VLMNRVSESI SASEQIEPLL TSDAENDKQC SAIDRVQTGK 540 TLGLKQTDSS EDTSDDNITT VPTVKGGMRR KHHRAWTLVE VMKLVEGVSK CGAGRWSEIK 600 RLAFASYSYR TSVDLKDKWR NLLKASFAQS PPDDGMNSRK HASVPIPAPI LLRVRQLAEM 660 HSQMPPNLGS NSSLGGVSGR SSVHETRSGY L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 460 | 466 | RRSRPRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027390.1 | 0.0 | uncharacterized protein LOC21386182 isoform X1 | ||||
Refseq | XP_024027391.1 | 0.0 | uncharacterized protein LOC21386182 isoform X1 | ||||
TrEMBL | A0A2P5BE35 | 0.0 | A0A2P5BE35_PARAD; GAMYB transcription factor | ||||
STRING | XP_010105512.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7849 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-129 | TRF-like 6 |