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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ARR-B | ||||||||
Protein Properties | Length: 675aa MW: 74533.6 Da PI: 6.5089 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.3 | 3.5e-28 | 196 | 249 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl PK02601.1 196 KPRVVWSVELHRKFVTAVNHL-GIDKAVPKKILDLMNVDKLTRENVASHLQKYRL 249 79*******************.********************************8 PP | |||||||
2 | Response_reg | 80.8 | 4.5e-27 | 16 | 124 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+pl ++ll+ +l++ +y +v++ +++ +al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++++g+++++ + + Ga PK02601.1 16 VLAVDDDPLCLRLLEALLRRCQY-HVTTSSEAVAALNMLRENRnnFDLVISDVQMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGAC 110 799********************.***************999889*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + PK02601.1 111 DYLLKPVRIEELKN 124 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.2E-159 | 1 | 669 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.9E-42 | 13 | 148 | No hit | No description |
SuperFamily | SSF52172 | 3.42E-36 | 13 | 137 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 7.5E-33 | 14 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.56 | 15 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.4E-24 | 16 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.61E-24 | 17 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-30 | 193 | 254 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.39 | 193 | 252 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-19 | 194 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-25 | 196 | 249 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-6 | 198 | 248 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MTVDDPRDQF PIGMRVLAVD DDPLCLRLLE ALLRRCQYHV TTSSEAVAAL NMLRENRNNF 60 DLVISDVQMP DMDGFKLLEL VGLEMDLPVI MLSGNGDPKL VMKGITHGAC DYLLKPVRIE 120 ELKNIWQHVI RRKKKDTKSQ RNCSNQDKSN VEGESGCGGT GNSDQKINKK RKDQFDDDED 180 ENDDNGDSDD PSAQKKPRVV WSVELHRKFV TAVNHLGIDK AVPKKILDLM NVDKLTRENV 240 ASHLQKYRLY LKRISCHANQ HANMEAALRS SDSSYLRMGS MNGLGNFNAL NGSMQFQNPA 300 FRSFPPGGIV GRLNTPSAMG LRGLPSSGMV QLSHTQNPNS SHDQMKFHQS TLPAGNHDGN 360 VLHGMPMPFE INQQHIKGVP HIGDLSTGLD DSTLFPLSDA KLTTSNNSSN ALGVANNMMM 420 LGHSHDPQGG REFGNQSSVS LTSLKSEFCP PLPDPGRCTT DWSSSAQTSG FQSTSFPLND 480 RYKQATMHPG ISRDNNMPIM APQIGGSQFD VSSFPSVSIR SHDSLTDAQC QTSAMNNGAL 540 IPSWDNHKHD PSYRPNIMSS SMNSLMPVNG GAGGPLDQSL DLKNQIYHRN TDFNSLGQTN 600 YVDPLIAKYE EVEKSTMETL KFKHEYLMSQ QRSHGGYNMS TNYGPLGDVV SAIMKQEQDG 660 RVEGDFDAYS LGTSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-28 | 192 | 255 | 1 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | RRKKKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089952.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Swissprot | B8AEH1 | 1e-135 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
Swissprot | P62598 | 1e-135 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
Swissprot | Q6K8X6 | 1e-135 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A2P5FN53 | 0.0 | A0A2P5FN53_TREOI; Two-component response regulator | ||||
STRING | XP_010089952.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-127 | response regulator 12 |