PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02558.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 431aa    MW: 48606.1 Da    PI: 6.4316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02558.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12e-1583172299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +k +++s+v+   +l lpkkf++ +  +k e+++++ledesg++ + k+     +  + l++GW++F  a++L egD+vvF+l+   +f  +v ++r+
  PK02558.1  83 VKLMLHSHVSVGFWLGLPKKFCDMYL-PK-EDTMMVLEDESGQVCDAKY--LALK--VGLSAGWRGFSIAHNLVEGDVVVFHLVTPIKF--KVYIIRT 172
                588999****************9994.33.5679***************..4444..44***********************9864444..8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1976174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2376173IPR015300DNA-binding pseudobarrel domain
CDDcd100175.65E-2680171No hitNo description
PROSITE profilePS5086311.43482173IPR003340B3 DNA binding domain
SMARTSM010191.9E-1582173IPR003340B3 DNA binding domain
PfamPF023623.5E-1383172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVLPQRRQSP SESSPQKVNR VGLTKKKEMR LVCYKNPMKT ENNKRKKVNV ESLYNDPKAA  60
LSPTMQRAYE VQATLAPEFP SMVKLMLHSH VSVGFWLGLP KKFCDMYLPK EDTMMVLEDE  120
SGQVCDAKYL ALKVGLSAGW RGFSIAHNLV EGDVVVFHLV TPIKFKVYII RTNCPDEVDG  180
ALGLLQLEGH MKQMTGTIIA CEKETESLKP DDVLECPHNN TQKTTSGTSE QSDKDTEVLG  240
PEALDGIRLS DESAVSFDQV KHLDDFNILV NGLIINSELP KYLLAKYYEL CCSQKAFLHE  300
NILEGLNCKL VAGVISETIN IADAIRASKI SSSVNDFTTW EKTLKAFEGL GMNVEFLCYR  360
LEQLVSLASK SKRYEKVKVE HKDAKEELRN LEAKMLVVKD RLSNLETEFE AVRVNFQDLQ  420
LMFKEVATAP W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12446KKKEMRLVCYKNPMKTENNKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024029001.11e-170B3 domain-containing protein Os01g0234100
TrEMBLA0A2P5CQR40.0A0A2P5CQR4_TREOI; B3 DNA binding domain containing protein
STRINGXP_010107958.11e-162(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-38B3 family protein